View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_high_97 (Length: 249)
Name: NF3710_high_97
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_97 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 194145 - 194364
Alignment:
| Q |
18 |
cctaaaaacaagcacacgttggctacatattccaacttccaagtctctcacaatcagttgtcttctcactaattgactacccgagccactcttctttagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
194145 |
cctaaaaacaagcacacgttggctacatattccaacttccaagtctctcacaatcagttgtcttctcactaattgactacacgagccactcttctttagc |
194244 |
T |
|
| Q |
118 |
attttatctttcacgtagacaaaccttcattttccaaatctcaaacattccattattacttttaatcctcgtccactcaaatttagttcttctaatagat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
194245 |
attttatctttcacgtagacaaaccttcattttccaaatctcaaacattccattattacttttaatcctcgtccactcaaatttagttcttctaatagat |
194344 |
T |
|
| Q |
218 |
gatcatgattttccctcctt |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
194345 |
gatcatgattttccctcctt |
194364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 25004664 - 25004771
Alignment:
| Q |
115 |
agcattttatctttcacgtagacaaaccttcattttccaaatctcaaacattccattattacttttaatcctcgtccactcaaatttagttcttctaata |
214 |
Q |
| |
|
||||||||| |||||||||| || | |||| ||||||||||||| ||||||||||| |||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
25004664 |
agcattttacctttcacgtaaacgagcctttattttccaaatcttaaacattccatcattacttt-aatccttgtgcactcaaatttagttcttctaata |
25004762 |
T |
|
| Q |
215 |
gatgatcat |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
25004763 |
gatgatcat |
25004771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 31210623 - 31210747
Alignment:
| Q |
113 |
ttagcattttatctttcacgtagacaaaccttcattttccaaatctcaaacattccattattacttttaatcctcgtccactcaaatttagttcttctaa |
212 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
31210623 |
ttagccttttatccttcacgtaggcaaaccttcattttccaaatctcaaacattccattattacttttactccccgcccactcaaatttagttcttctaa |
31210722 |
T |
|
| Q |
213 |
tagatgatcatgattttccctcctt |
237 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31210723 |
tagatgatcatgattttccctcctt |
31210747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 48655110 - 48655066
Alignment:
| Q |
44 |
atattccaacttccaagtctctcacaatcagttgtcttctcacta |
88 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
48655110 |
atatgccaacgtccaagtctctcacaatcagttggcttcccacta |
48655066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 5005486 - 5005379
Alignment:
| Q |
115 |
agcattttatctttcacgtagacaaaccttcattttccaaatctcaaacattccattattacttttaatcctcgtccactcaaatttagttcttctaata |
214 |
Q |
| |
|
||||||||| |||||||||| || | |||| ||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
5005486 |
agcattttacctttcacgtaaacgagcctttattttccaaatcttaaacattccattattac-tttaatccttgtgcactcaaatttagttcttctaata |
5005388 |
T |
|
| Q |
215 |
gatgatcat |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
5005387 |
gatgatcat |
5005379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 16474798 - 16474905
Alignment:
| Q |
115 |
agcattttatctttcacgtagacaaaccttcattttccaaatctcaaacattccattattacttttaatcctcgtccactcaaatttagttcttctaata |
214 |
Q |
| |
|
||||||||| |||||||||| || | |||| ||||||||||||| ||||||||||| |||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
16474798 |
agcattttacctttcacgtaaacgagcctttattttccaaatcttaaacattccatcattacttt-aatccttgtgcactcaaatttagttcttctaata |
16474896 |
T |
|
| Q |
215 |
gatgatcat |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
16474897 |
gatgatcat |
16474905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University