View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_high_98 (Length: 249)
Name: NF3710_high_98
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_high_98 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 10991633 - 10991868
Alignment:
| Q |
1 |
gctattagaatacgatatatcattccgccatctaaaagtttcagcacttccttttttaactacctcattcattgttggattgagtctccttttggattga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10991633 |
gctattagaatacgatatatcatttcgccatctaaaagtttcagcacttccttttttaactacctcattcattgttggattgagtctccttttggattga |
10991732 |
T |
|
| Q |
101 |
acaaccaatttaaactcttctaccaatttgattttgtgcatgcaatatcctaggctttgatgcatcctttctcataaaaacatatttgagatacagtagt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10991733 |
acaaccaatttaaactctcctaccaatttgattttgtgcatgcaatatcctaggctttgatgcatcctttctcataaaaacatatttgagatacagtagt |
10991832 |
T |
|
| Q |
201 |
atttgctccttgacattatgatgctttaagttactc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
10991833 |
atttgctccttgacattatgatgctttaagttactc |
10991868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University