View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_low_10 (Length: 546)

Name: NF3710_low_10
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_low_10
NF3710_low_10
[»] chr6 (2 HSPs)
chr6 (122-532)||(28612106-28612516)
chr6 (18-126)||(28612579-28612687)
[»] chr3 (11 HSPs)
chr3 (130-513)||(52653526-52653910)
chr3 (306-519)||(40574287-40574499)
chr3 (132-250)||(50914652-50914771)
chr3 (339-510)||(33709792-33709963)
chr3 (336-489)||(31362247-31362400)
chr3 (134-203)||(2257446-2257515)
chr3 (130-316)||(33709572-33709752)
chr3 (130-175)||(23686027-23686072)
chr3 (130-175)||(24058264-24058309)
chr3 (433-485)||(23686089-23686141)
chr3 (433-485)||(24058326-24058378)
[»] chr8 (3 HSPs)
chr8 (130-513)||(12729143-12729527)
chr8 (130-363)||(28696212-28696448)
chr8 (433-513)||(44729133-44729214)
[»] chr1 (9 HSPs)
chr1 (130-513)||(49053557-49053930)
chr1 (130-512)||(49061137-49061509)
chr1 (340-489)||(42263434-42263583)
chr1 (336-489)||(50059453-50059606)
chr1 (139-245)||(50059265-50059371)
chr1 (339-490)||(52282015-52282168)
chr1 (137-209)||(42263734-42263808)
chr1 (334-408)||(10917477-10917551)
chr1 (375-467)||(17458409-17458501)
[»] chr7 (8 HSPs)
chr7 (133-527)||(12239589-12239983)
chr7 (254-490)||(34091475-34091713)
chr7 (151-315)||(1840426-1840589)
chr7 (344-464)||(24870385-24870505)
chr7 (339-421)||(24871395-24871477)
chr7 (254-292)||(33988783-33988821)
chr7 (334-387)||(30108293-30108346)
chr7 (369-489)||(20463987-20464107)
[»] chr4 (11 HSPs)
chr4 (130-408)||(24129428-24129707)
chr4 (133-527)||(48779825-48780222)
chr4 (130-490)||(20251149-20251523)
chr4 (157-316)||(1494951-1495110)
chr4 (130-221)||(122831-122922)
chr4 (161-285)||(1516541-1516664)
chr4 (372-513)||(24391830-24391970)
chr4 (217-285)||(1533067-1533135)
chr4 (328-373)||(46324440-46324485)
chr4 (130-177)||(19226769-19226818)
chr4 (300-391)||(27538195-27538287)
[»] chr5 (7 HSPs)
chr5 (130-316)||(36202868-36203054)
chr5 (197-527)||(9851409-9851740)
chr5 (130-513)||(29006222-29006622)
chr5 (129-285)||(11042984-11043140)
chr5 (336-495)||(36203051-36203209)
chr5 (130-226)||(28274097-28274195)
chr5 (196-252)||(15205185-15205241)
[»] scaffold0007 (2 HSPs)
scaffold0007 (130-489)||(217512-217861)
scaffold0007 (133-186)||(215646-215699)
[»] chr2 (3 HSPs)
chr2 (147-527)||(14218851-14219233)
chr2 (130-478)||(34681118-34681464)
chr2 (323-383)||(17862390-17862450)


Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 122 - 532
Target Start/End: Complemental strand, 28612516 - 28612106
Alignment:
Q  122 gcataccctgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaat 221  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  28612516 gcataccctgagagaaatttccaaaatatatttaaaa--ttgtaatggttaaatagaggccttttagagcaaaggtgtattgtttgacaattgaagcaat 28612419  T
Q  222 ataacaattcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtatt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  28612418 ataacaattcatgaacaaactcttccaaatgattgtttttcttcaccaaatgacataagtttctttataaagatagacactttcgaggcagaaaagtatt 28612319  T
Q  322 cagaaaa-tagagacaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgac 420  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28612318 cagaaaaatagagacaaaatcacattcttgtgagtcgaaattctgccgaaaattatactaaatcattctttcttatctctagtgcacgaggggaattgac 28612219  T
Q  421 agaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgctgatat 519  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  28612218 agaacattgttttgtatactaccattgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgtattctgaaggggattcgccgatat 28612119  T
Q  520 acccttttacata 532  Q
    ||| |||||||||    
T  28612118 accattttacata 28612106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 28612687 - 28612579
Alignment:
Q  18 tttggttccttcttttttgagacctgaaacttgatttcctttggtttttcaagatgcatgtgaagtgcattcaagtgttattgcattttatcaaatgaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28612687 tttggttccttcttttttgagacctgaaacttgatttcctttggtttttcaagatgcatgtgaagtgcattcaagtgttattgcattttatcaaatgaat 28612588  T
Q  118 tggggcata 126  Q
    |||||||||    
T  28612587 tggggcata 28612579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 8e-84; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 130 - 513
Target Start/End: Original strand, 52653526 - 52653910
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaat 229  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||| | ||||||||| | |||||||||||| ||||||||||| ||||| |||| ||    
T  52653526 tgagagaaatttccaaaatatatttggaaagttgcaatgattaaataaataccttttagtgaaaaggtgtattgtttgacaattgatgcaatgtaaccat 52653625  T
Q  230 tcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcag-aaaa 328  Q
    ||||||||||||||||  ||||| |||| | |||||| |||| |||| ||||||||  ||| | | |||||||||||||||||||||| |||||| || |    
T  52653626 tcatgaacaaactcttttaaatggttgtgtctcttcaccaaaggacacaagtttctctatagacaaagacactttggaggcagaaaagaattcagtaata 52653725  T
Q  329 tagagacaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacatt 428  Q
    | || | ||||| ||||| ||||||||  ||||||||   ||||||||||||||||||||||  || ||||||||||||||||  |||||||||||| ||    
T  52653726 tcgacagaaaattacattgttgtgagtttaaattctgctgaaaattatactaaatcattcttacttttctctagtgcacgaggaaaattgacagaacttt 52653825  T
Q  429 gttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgc 513  Q
     || |||| ||||||| ||  |||||  |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  52653826 attctgtaaactaccattg-tcgatacacttgatgtgaatgtgcaagtcacgtcaaggattccattgtatcctgaaggggattcgc 52653910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 306 - 519
Target Start/End: Complemental strand, 40574499 - 40574287
Alignment:
Q  306 gaggcagaaaagtattcagaaaatagagacaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgc 405  Q
    ||||||||||| || |||| |||  || ||||||||||||||||||||||| |||||||| | ||||| ||| ||||||||||||| || ||||||||||    
T  40574499 gaggcagaaaattagtcaggaaa--gacacaaaatcacattcttgtgagtcaaaattctgccgaaaataatattaaatcattctttcttttctctagtgc 40574402  T
Q  406 acgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaag 504  Q
    ||||| | |||||||||||| || || |||| |||| || |||  |||| |||| |||||||||| ||||||||||||| |||||||| ||| |||||||    
T  40574401 acgagagaaattgacagaactttattctgtaaactatcattgattgatacgcttcgtgtgaatgtgcaagtcacgtcaaagattccatagtatcctgaag 40574302  T
Q  505 gggattcgctgatat 519  Q
    |  ||||||||||||    
T  40574301 gtaattcgctgatat 40574287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 50914771 - 50914652
Alignment:
Q  132 agagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaattc 231  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  ||| ||||    
T  50914771 agagaaattttcaaaatatatttgaaaagttgcaatggttaaatagagaccttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaaccattc 50914672  T
Q  232 atg-aacaaactcttccaaa 250  Q
    ||| ||||||||||||||||    
T  50914671 atgaaacaaactcttccaaa 50914652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 339 - 510
Target Start/End: Original strand, 33709792 - 33709963
Alignment:
Q  339 atcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtaca 438  Q
    |||||||||| ||||||| ||||| || | ||||||||||||||||||||||| || |||||||||||| || | | |||||||||| || || |||| |    
T  33709792 atcacattctggtgagtctaaattttgccgaaaattatactaaatcattctttcttttctctagtgcaccagagaatttgacagaactttattctgtaaa 33709891  T
Q  439 ctaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggatt 510  Q
    |||||| ||  ||||| ||||||||||||||| ||||||||||||||||||| || ||| ||| |||||||||    
T  33709892 ctaccattg-tcgatacgcttggtgtgaatgtgcaagtcacgtcaaggattctatcgtatcctaaaggggatt 33709963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 336 - 489
Target Start/End: Complemental strand, 31362400 - 31362247
Alignment:
Q  336 aaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgt 435  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||  || ||| || | | ||||||||||||  |||||||||||| || ||||||    
T  31362400 aaaatcacattcttgtgagtcaaaattctgtcgaaaataatactaaatttttttttattttttttagtgcacgaggaaaattgacagaactttattttgt 31362301  T
Q  436 acactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggatt 489  Q
    | ||||| |  || ||||| | |||||||||||||| ||||  |||||||||||    
T  31362300 aaactactatcgatcgatacgtttggtgtgaatgtataagttccgtcaaggatt 31362247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 2257515 - 2257446
Alignment:
Q  134 agaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattg 203  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||||||| |||| |||||||    
T  2257515 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccatttagagaaaagatgtattg 2257446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 316
Target Start/End: Original strand, 33709572 - 33709752
Alignment:
Q  130 tgagagaaatttccaaaata---tatttaaaaagttgcaatggttaaatagagaccttttagagcaaa--ggtgtattgcttgacaattgaagcaatata 224  Q
    ||||||||||||||||||||   |||||  |||||||||||||||||| |||||||||||| |  |||  |||||| ||||| |||||||||||||| ||    
T  33709572 tgagagaaatttccaaaataatatatttggaaagttgcaatggttaaa-agagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaatgta 33709670  T
Q  225 acaattcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaa 316  Q
              |||||| |||| |||| | || |||  ||||| |||| |||||||||||||  ||||| | |||||||||||||||||||||    
T  33709671 ----------aacaaaatctttcaaagggttctttcccttcaccaaaggacataagtttctctataaatagagacactttggaggcagaaaa 33709752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 23686027 - 23686072
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaat 175  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  23686027 tgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 23686072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 24058264 - 24058309
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaat 175  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  24058264 tgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 24058309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 485
Target Start/End: Original strand, 23686089 - 23686141
Alignment:
Q  433 tgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaag 485  Q
    |||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  23686089 tgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaag 23686141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 485
Target Start/End: Original strand, 24058326 - 24058378
Alignment:
Q  433 tgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaag 485  Q
    |||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  24058326 tgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaag 24058378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 5e-79; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 130 - 513
Target Start/End: Original strand, 12729143 - 12729527
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaat 229  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||    
T  12729143 tgagagaaatttccaaaatatatttggaaagttgcaatggttaaatagagaccttttagagaaaaggtgtaatgctcgacaattgaagcaatataaccat 12729242  T
Q  230 tcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcagaaa-a 328  Q
    |||||| |||||||||| |||   |||||| |||||| || | ||||||| |||||   |||| | |  || | |||||||||||||| | ||| ||| |    
T  12729243 tcatgagcaaactcttctaaagagttgtttctcttcaccacaggacataaatttctctgtaaatagatgcattatggaggcagaaaagaagtcaaaaata 12729342  T
Q  329 tagagacaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacatt 428  Q
    |||| | ||||||||||| ||||| ||| |||||||| | ||||||||||||||| ||||||| || ||||||||||||||| | |||||||||||| ||    
T  12729343 tagacagaaaatcacattgttgtgtgtcaaaattctgccgaaaattatactaaataattctttcttttctctagtgcacgagagaaattgacagaacttt 12729442  T
Q  429 gttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgc 513  Q
     ||  ||| |||| ||||   ||||||||||||||||||||| ||||||| |||||||||| ||| ||| ||||||||||| ||||    
T  12729443 attcagtaaacta-caattgtcgatatgcttggtgtgaatgtgcaagtcatgtcaaggatttcatcgtatcctgaaggggaatcgc 12729527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 130 - 363
Target Start/End: Complemental strand, 28696448 - 28696212
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaat 229  Q
    |||||| |||||  ||||||| |  ||||||||||||||| |||||||||| ||||||||| ||| ||||| ||||| |||||||||||||| |||| ||    
T  28696448 tgagagtaatttttaaaatatttcgaaaaagttgcaatgggtaaatagagatcttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaaccat 28696349  T
Q  230 tcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcaga-aaa 328  Q
    ||||||||||||||||| ||| |  ||||| |||||| ||||  |||||||||||| |||||| | |||||||||||| ||||||||  ||| ||| |||    
T  28696348 tcatgaacaaactcttctaaagggatgtttctcttcaccaaagaacataagtttctccataaatagagacactttggatgcagaaaatgattgagagaaa 28696249  T
Q  329 tagagacaaa--atcacattcttgtgagtcgaaattc 363  Q
     ||||| |||  |||||||||||||||||| ||||||    
T  28696248 aagagataaagtatcacattcttgtgagtctaaattc 28696212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 513
Target Start/End: Original strand, 44729133 - 44729214
Alignment:
Q  433 tgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgc 513  Q
    |||| |||| || ||| ||||| ||||||| ||||||| ||||||||||||||||||||| |||| ||| ||||||||||||    
T  44729133 tgtaaactatcattgatcgatacgcttggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgc 44729214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 7e-75; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 130 - 513
Target Start/End: Original strand, 49053557 - 49053930
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaat 229  Q
    |||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||| | |||||||||||||              ||| |||| ||    
T  49053557 tgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagaccttttagtgaaaaggtgtattgc--------------aatgtaaccat 49053642  T
Q  230 tcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcagaaaa- 328  Q
    |||| ||||||||||| ||||||||||| | |||||| |||| ||||||||||| |  ||||| ||||||| | ||| |||||||||| |||| |||||     
T  49053643 tcataaacaaactctttcaaatgattgtgtctcttcaccaaaggacataagtttttatataaatatagacattatggtggcagaaaagaattctgaaaaa 49053742  T
Q  329 tagagaca--aaatcacattcttgtgagtcgaaattctgtcaaaa-attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaac 425  Q
    ||||||||  |||||||||| ||||| |||  ||||||| ||||| |||||||||||||||||||| |  ||||||||||||||||| ||||| ||||||    
T  49053743 tagagacataaaatcacattgttgtgtgtcataattctgccaaaaaattatactaaatcattctttctcttctctagtgcacgagggaaattggcagaac 49053842  T
Q  426 attgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgc 513  Q
     || ||||||| ||||||| ||  ||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  49053843 tttattttgtaaactaccattg-tcgatatgcttggtgtgaatgtgcaagtcacgtcaaggatttcattgtatcctgaaggggattcgc 49053930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 130 - 512
Target Start/End: Original strand, 49061137 - 49061509
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaat 229  Q
    |||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||| | | |||||||||||              ||| |||| ||    
T  49061137 tgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagaccttttagtgaataggtgtattgc--------------aatgtaaccat 49061222  T
Q  230 tcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcagaaaa- 328  Q
    |||| |||||| |||| ||||| ||||| | ||||||  ||| |||||||||||||  ||||| | ||||| | | | |||||||||| ||||||||||     
T  49061223 tcataaacaaattctttcaaataattgtgtctcttcacgaaaggacataagtttctatataaatagagacattatagtggcagaaaagaattcagaaaaa 49061322  T
Q  329 tagagaca--aaatcacattcttgtgagtcgaaattctgtc-aaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaac 425  Q
    ||||||||  |||||||||| ||||| |||  ||||||| | |||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||    
T  49061323 tagagacataaaatcacattgttgtgtgtcataattctgccgaaaaattatactaaatcattctttcttttctctagtgcacgagggaaattgacaaaac 49061422  T
Q  426 attgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcg 512  Q
     || || |||| ||||||| ||  ||||||| ||||||||||||| ||| ||||||||||||||||||||||  ||||||||||||||    
T  49061423 tttattctgtaaactaccattg-tcgatatgtttggtgtgaatgtgcaaatcacgtcaaggattccattgtattctgaaggggattcg 49061509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 489
Target Start/End: Complemental strand, 42263583 - 42263434
Alignment:
Q  340 tcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacac 439  Q
    ||||||||||||||||| |||| ||| | ||||| |||||| |||||||||| || ||||||||||||||| | ||| |||| ||| |||||||||| |     
T  42263583 tcacattcttgtgagtcaaaatactgcctaaaataatactatatcattctttcttttctctagtgcacgagagaaatcgacaaaactttgttttgtaaat 42263484  T
Q  440 taccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggatt 489  Q
    || || ||  ||||| |||| || ||||||| ||||||| ||||| ||||    
T  42263483 taacattgttcgatacgcttagtatgaatgtgcaagtcatgtcaaagatt 42263434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 489
Target Start/End: Original strand, 50059453 - 50059606
Alignment:
Q  336 aaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgt 435  Q
    |||| ||||||||||||| || ||||||||| |||||| ||||| ||||||||||| || ||||||||||||||| | |||| ||||||| || || | |    
T  50059453 aaaaacacattcttgtgaatcaaaattctgtaaaaaataatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctat 50059552  T
Q  436 acactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggatt 489  Q
    | |||| || ||| ||||| | | | ||||||| || |||||||||| ||||||    
T  50059553 aaactatcattgatcgatacgttggatgtgaatttataagtcacgtccaggatt 50059606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 50059265 - 50059371
Alignment:
Q  139 tttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaattcatgaaca 238  Q
    ||||||||||||||||||||| ||||| | ||||||||||||| || ||| | | ||||||| |||||||  ||  ||||||| |||| |||| | ||||    
T  50059265 tttccaaaatatatttaaaaaattgcagtcgttaaatagagacattatagtgaagaggtgtaatgcttgaacatcaaagcaatgtaaccattcgtaaaca 50059364  T
Q  239 aactctt 245  Q
    | |||||    
T  50059365 agctctt 50059371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 490
Target Start/End: Complemental strand, 52282168 - 52282015
Alignment:
Q  339 atcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgagggg--aattgacagaacattgttttgta 436  Q
    |||||||| || |||||  ||||||| |  ||||| ||| ||||||||||||| || ||||||||||| ||| |   |||||||| ||| || || ||||    
T  52282168 atcacatttttatgagtttaaattctattgaaaataatattaaatcattctttcttttctctagtgcatgagagagaaattgacataactttattctgta 52282069  T
Q  437 cactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattc 490  Q
     ||||||| ||| ||||  ||||||||||||| | ||||||| ||||| |||||    
T  52282068 aactaccattgatcgatgcgcttggtgtgaatatgcaagtcatgtcaaagattc 52282015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 42263808 - 42263734
Alignment:
Q  137 aatttccaaaatata--tttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgac 209  Q
    |||||||||||||||  ||| ||||||||||||| || ||||||||| ||| || | |||| |||||||||||||    
T  42263808 aatttccaaaatataaatttgaaaagttgcaatgattgaatagagacatttaagtgaaaagatgtattgcttgac 42263734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 408
Target Start/End: Original strand, 10917477 - 10917551
Alignment:
Q  334 acaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacg 408  Q
    |||||||||||||||||| |||| || ||||| | ||||| |||| ||||||||  || || |||||||||||||    
T  10917477 acaaaatcacattcttgtaagtcaaagttctgccgaaaataatacaaaatcatttcttcttttctctagtgcacg 10917551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 467
Target Start/End: Original strand, 17458409 - 17458501
Alignment:
Q  375 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaa 467  Q
    |||||||||||||||||  | |||||||||||||||  |||| || | ||| || ||||||| |||| || ||| ||||| ||||||| ||||    
T  17458409 atactaaatcattctttcatttctctagtgcacgagatgaatagagataactttattttgtaaactatcattgatcgatacgcttggtttgaa 17458501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 133 - 527
Target Start/End: Complemental strand, 12239983 - 12239589
Alignment:
Q  133 gagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaattca 232  Q
    |||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||| | ||| |||||||||||||||||||| ||||| |||| |||||    
T  12239983 gagaaatttccaaaatatatttgaaa-gttgcaatggttaaagaaagaccttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattca 12239885  T
Q  233 tgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcagaaa-atag 331  Q
    ||||||||||||| |||||| |||    |||| |||||| || ||||||||||  ||||| | |||||||||||||| ||||||| ||| ||||| ||||    
T  12239884 tgaacaaactctttcaaatggttgcggctcttgatcaaaggatataagtttctctataaataaagacactttggaggtagaaaagaattaagaaatatag 12239785  T
Q  332 agacaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgtt 431  Q
    | | ||||||||||| ||||| ||   ||||||| | ||||| ||| ||||| ||||||| |||||||||||  || ||   |||||||| ||| || ||    
T  12239784 atagaaaatcacattgttgtgtgttagaattctgccgaaaataatattaaattattctttcttatctctagtatactagataaattgacaaaactttatt 12239685  T
Q  432 ttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgctgatataccctttt 527  Q
     || | ||||||| ||  ||||| ||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||| || ||||||||||    
T  12239684 ctggaaactaccattg-tcgatacgcttggtgtgaatgtgcaagtcacgtcaaggatttcatcgtatcctgaaggggattcgccgacataccctttt 12239589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 254 - 490
Target Start/End: Complemental strand, 34091713 - 34091475
Alignment:
Q  254 ttgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcagaaaa-tagagacaaaa-tcacattcttgt 351  Q
    |||||| | |||||||||   ||||| |||||| ||||| | ||||||||  ||| ||||||| ||||||||||| ||||||||||| ||||||| || |    
T  34091713 ttgtttctgttcatcaaagatcataaatttctttataaataaagacacttgagagacagaaaaatattcagaaaaatagagacaaaaatcacattattat 34091614  T
Q  352 gagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacg 451  Q
    ||||| |||||| | | ||||| ||| |||||||||| || || |||||| |||| ||| | |||||| ||||| ||  |||||| ||||||| | |       
T  34091613 gagtcaaaattccgccgaaaataatattaaatcattcattcttttctctaatgcatgagagaaattgagagaactttactttgtaaactaccattaattc 34091514  T
Q  452 atatgcttggtgtgaatgtacaagtcacgtcaaggattc 490  Q
    ||| | ||||||||||||| |||||||||||||||||||    
T  34091513 atacgattggtgtgaatgtgcaagtcacgtcaaggattc 34091475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 315
Target Start/End: Original strand, 1840426 - 1840589
Alignment:
Q  151 atttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaattcatgaacaaactcttccaaa 250  Q
    |||| ||||||||||||||||||  |||||||||||||   || |||||| | ||||| |||| ||| | | |||| ||||||||||||| ||||| |||    
T  1840426 atttgaaaagttgcaatggttaag-agagaccttttagta-aatggtgtaattcttgataattcaagtattgtaaccattcatgaacaaattcttctaaa 1840523  T
Q  251 tgattgtttttcttcatcaaatg-acataagtttcttcataaagatagacactttggaggcagaaa 315  Q
       |||| ||||||||||||| | ||||||||||||  ||||| | ||||| ||||||||||||||    
T  1840524 aagttgtctttcttcatcaaaaggacataagtttctctataaatagagacattttggaggcagaaa 1840589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 464
Target Start/End: Original strand, 24870385 - 24870505
Alignment:
Q  344 attcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactacc 443  Q
    ||||||||||| | |||||||| ||||||| ||||||||| | ||||| || |||||||||||||||   |||||| ||||| || || |||| |||| |    
T  24870385 attcttgtgagacaaaattctgccaaaaataatactaaataagtctttcttttctctagtgcacgagaaaaattgatagaactttattatgtaaactatc 24870484  T
Q  444 aatgaacgatatgcttggtgt 464  Q
    | ||| | ||| |||||||||    
T  24870485 attgatcaatacgcttggtgt 24870505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 24871395 - 24871477
Alignment:
Q  339 atcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgaca 421  Q
    |||||||| ||||||||| |||||||| | ||||| ||| ||||||||||| | || |||  |||||||||| ||||||||||    
T  24871395 atcacattattgtgagtcaaaattctgccgaaaataatattaaatcattctctcttttcttaagtgcacgagaggaattgaca 24871477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 33988783 - 33988821
Alignment:
Q  254 ttgtttttcttcatcaaatgacataagtttcttcataaa 292  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  33988783 ttgtttttcttcatcaaatgacataaatttctttataaa 33988821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 30108346 - 30108293
Alignment:
Q  334 acaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcatt 387  Q
    ||||||||||||||||||||||| | ||| || | ||||| |||||||||||||    
T  30108346 acaaaatcacattcttgtgagtcaacattatgccgaaaataatactaaatcatt 30108293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 489
Target Start/End: Original strand, 20463987 - 20464107
Alignment:
Q  369 aaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaat 468  Q
    ||||| ||||||||||||| |||  |  ||||| || ||||| | |||||||||||  || ||||  | || | || ||| |||||||||||||||||||    
T  20463987 aaaataatactaaatcattatttacttactctaatgtacgagagaaattgacagaaatttattttacaaacaatcattgatcgatatgcttggtgtgaat 20464086  T
Q  469 gtacaagtcacgtcaaggatt 489  Q
    || |||||| ||| |||||||    
T  20464087 gtgcaagtctcgttaaggatt 20464107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 130 - 408
Target Start/End: Complemental strand, 24129707 - 24129428
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaat 229  Q
    |||||||||||  ||||||||||||| ||||| |||||||||||||| || | |||| ||| ||||||||||||||||| |||||||||||| |||| ||    
T  24129707 tgagagaaattatcaaaatatatttagaaagtcgcaatggttaaatataggctttttggaggaaaggtgtattgcttgataattgaagcaatgtaaccat 24129608  T
Q  230 tcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcagaaaa- 328  Q
    ||||||||||||||||||||||| || |||| ||| | ||||||||||||||||||  ||||| | ||||||| |||||||| ||||  | | ||||||     
T  24129607 tcatgaacaaactcttccaaatggttattttccttaaccaaatgacataagtttctctataaatagagacactctggaggcaaaaaataagtaagaaaat 24129508  T
Q  329 tagagacaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacg 408  Q
    |||| | || |||||||| ||||||||| |||||| ||||||||| |||||||||| |||||| || |||||||||||||    
T  24129507 tagatagaacatcacatttttgtgagtctaaattccgtcaaaaataatactaaatctttctttcttttctctagtgcacg 24129428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 133 - 527
Target Start/End: Complemental strand, 48780222 - 48779825
Alignment:
Q  133 gagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaattca 232  Q
    ||||||||| ||||||||||||  |||||||||||| ||||| | ||| ||||||||| |||||| || || |||||||||||||||||||||| |||||    
T  48780222 gagaaattttcaaaatatatttggaaagttgcaatgattaaaca-agatcttttagagaaaaggtataatgtttgacaattgaagcaatataactattca 48780124  T
Q  233 tgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattca---gaaaat 329  Q
    |||| ||| ||||   || | |||||| ||| || |||| ||| | ||||| |  ||||| | ||| |||||||||||||||||  ||| |    ||||     
T  48780123 tgaataaattcttttcaaaggttgtttctctacaccaaaagacttgagtttatctataaataaagatactttggaggcagaaaataattgaaagaaaaag 48780024  T
Q  330 agagacaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattg 429  Q
    ||| | || ||||||||||||| | || ||||||| || ||||| ||| |||||||||| || || ||||||||||||||    || ||||| ||| ||     
T  48780023 agatagaacatcacattcttgtcattctaaattctatcgaaaataatattaaatcattcattattttctctagtgcacgacataaactgacataacttta 48779924  T
Q  430 ttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgctgatataccctttt 527  Q
    || | || |||| || |||  |||||||||||||||||||| ||||||||||||| |||| ||| ||| |||||||||||||| | |||||||||||||    
T  48779923 ttctctaaactatcattgattgatatgcttggtgtgaatgtgcaagtcacgtcaatgatttcatagtatcctgaaggggattcaccgatataccctttt 48779825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 130 - 490
Target Start/End: Original strand, 20251149 - 20251523
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaat 229  Q
    ||||||||||||  |||||||||||  ||||||||||| |||||||||||| ||||||||| ||| |||||||| |||| ||||||| |||| |||| ||    
T  20251149 tgagagaaatttttaaaatatatttggaaagttgcaattgttaaatagagatcttttagagaaaaagtgtattgtttgataattgaaacaatgtaactat 20251248  T
Q  230 tcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcag----- 324  Q
    |||||||| ||||||   ||||  ||||||||||| | |||| |||||||||||||  ||||| | | | | ||| |||||||||||| | ||||         
T  20251249 tcatgaac-aactctcttaaatagttgtttttctttaccaaaggacataagtttctctataaataaaaatatttttgaggcagaaaagaagtcagaaaaa 20251347  T
Q  325 --------aaaatagagacaaaatcacattcttgtgagtc-gaaattctgtc-aaaaattatactaaatcattcttttttatctctagtgcacgagggga 414  Q
            |||| ||| | || |||||||||||||| |||  ||||| |||| |||||  ||||||||||||| ||| || ||| ||||||||||| | |    
T  20251348 ataaaagaaaaagagatagaacatcacattcttgtgtgtctaaaattatgtcaaaaaaaaatactaaatcattatttcttttctgtagtgcacgagagaa 20251447  T
Q  415 attgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattc 490  Q
    ||||||||||| || || |||| |||| || ||| |||||  |||| |||||||||||||| ||| |||| |||||    
T  20251448 attgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaaggcacatcaatgattc 20251523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 157 - 316
Target Start/End: Complemental strand, 1495110 - 1494951
Alignment:
Q  157 aaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaattcatgaac-aaactcttccaaatgatt 255  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||  |||| ||| ||||||||||||||| |||||||||| ||| |||| |||| | ||    
T  1495110 aaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacagttgaagcaatataaccattcatgaacaaaattctttcaaaggttt 1495012  T
Q  256 gtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaa 316  Q
    ||||   |||| ||||||||||||||||||  ||||| | ||||| |||||||||| ||||    
T  1495011 gtttccgttcaccaaatgacataagtttctctataaaaagagacattttggaggcataaaa 1494951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 122831 - 122922
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaat 221  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||| || |||||||| ||| ||||||||||||||||||||| ||||    
T  122831 tgagagaaatttccaaagtatatttgaaaagttgcaatagttaaatagaaacattttagagaaaatgtgtattgcttgacaattgaaacaat 122922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 161 - 285
Target Start/End: Complemental strand, 1516664 - 1516541
Alignment:
Q  161 ttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaattcatgaacaaactcttccaaatgattgtttt 260  Q
    |||||||||||||| |||||| |||||||| ||||||||| ||||| | || ||| |||||||||| ||||||||||||| |||| |||| | || |||     
T  1516664 ttgcaatggttaaa-agagacattttagagaaaaggtgtagtgctttagaaatgacgcaatataaccattcatgaacaaaatctttcaaagggttatttc 1516566  T
Q  261 tcttcatcaaatgacataagtttct 285  Q
      |||| ||||||||||||||||||    
T  1516565 cgttcaccaaatgacataagtttct 1516541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 513
Target Start/End: Original strand, 24391830 - 24391970
Alignment:
Q  372 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 471  Q
    |||||||||||||||||||| || ||||||||||| ||| | |||||||| ||| || || |||| |||| || ||  ||||| | |||||||| ||||     
T  24391830 attatactaaatcattctttcttttctctagtgcatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtg 24391927  T
Q  472 caagtcacgtcaaggattccattgta-cctgaaggggattcgc 513  Q
    ||||||||  |||||||||||||||| | ||||||||||||||    
T  24391928 caagtcacaccaaggattccattgtatcttgaaggggattcgc 24391970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 1533135 - 1533067
Alignment:
Q  217 gcaatataacaattcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttct 285  Q
    |||||||||| ||| ||||||||| |||| |||| | ||||||  ||||||||||||||||||||||||    
T  1533135 gcaatataaccatttatgaacaaaatctttcaaagggttgtttcccttcatcaaatgacataagtttct 1533067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 46324440 - 46324485
Alignment:
Q  328 atagagacaaaatcacattcttgtgagtcgaaattctgtcaaaaat 373  Q
    ||||| ||||||||||||||||||||||||||||||| || |||||    
T  46324440 atagacacaaaatcacattcttgtgagtcgaaattctttcgaaaat 46324485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 19226818 - 19226769
Alignment:
Q  130 tgagagaaatttccaaaatatat--ttaaaaagttgcaatggttaaatag 177  Q
    |||||||||||||||||||||||  ||  |||||||||||||||||||||    
T  19226818 tgagagaaatttccaaaatatatatttggaaagttgcaatggttaaatag 19226769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 27538287 - 27538195
Alignment:
Q  300 actttggaggcagaaaagtattcagaaaatagag--acaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttt 391  Q
    |||||||||||||||||  ||| |||||| |||   |||| |||||||||||||| ||  |||||||| | ||||| |||||||||||||||||    
T  27538287 actttggaggcagaaaatcatttagaaaa-agaacaacaacatcacattcttgtgggtgaaaattctgccgaaaataatactaaatcattcttt 27538195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 316
Target Start/End: Original strand, 36202868 - 36203054
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaat 229  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |||| |||| ||    
T  36202868 tgagagaaatttttaaaatatatttgaaaagttgcaatggttaaaaagagaccttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaaccat 36202967  T
Q  230 tcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaa 316  Q
    ||||||||||||||||  ||| | || ||| |||||| ||||||||||||||||||  ||||| | ||||||||||||| |||||||    
T  36202968 tcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaa 36203054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 197 - 527
Target Start/End: Complemental strand, 9851740 - 9851409
Alignment:
Q  197 tgtattgcttgacaattgaagcaatataacaattcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagata 296  Q
    ||||||||||||||||||||||||| | || |||||| ||||||||||  |||||| || ||| |||||| |||| |||||||||||||   |||| | |    
T  9851740 tgtattgcttgacaattgaagcaatctgaccattcataaacaaactctgtcaaatggttatttctcttcaccaaaagacataagtttctctgtaaataga 9851641  T
Q  297 gacactttggaggcagaaaagtattcagaaa-atagagacaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattctttttta 395  Q
    |||| |||||||||||||||| | ||||||| || || | ||| ||||||| ||||||||| |||||||| ||||||| ||||||||||| ||||| ||     
T  9851640 gacattttggaggcagaaaagaagtcagaaacatggatagaaattcacattattgtgagtcaaaattctgccaaaaataatactaaatcagtctttcttt 9851541  T
Q  396 tctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattg 495  Q
    |||||||||||| || | |  ||||| ||| || || |||| |  |||| ||  ||||| ||||||||||||||| ||| |||| | ||| ||||||| |    
T  9851540 tctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtgcaaatcacattaagtattccatcg 9851442  T
Q  496 ta-cctgaaggggattcgctgatataccctttt 527  Q
    || | |||||||||||||| | |||||||||||    
T  9851441 tatcttgaaggggattcgccggtataccctttt 9851409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 130 - 513
Target Start/End: Original strand, 29006222 - 29006622
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaag---gtgtattgcttgacaattgaagcaatataac 226  Q
    |||||||||||||||||||||| || ||||||||||||  ||||| ||||| ||||||||  |||    ||||| || || || ||||||||||| ||||    
T  29006222 tgagagaaatttccaaaatataattgaaaagttgcaataattaaa-agagatcttttagaaaaaaaaaagtgtaatgttttacgattgaagcaatgtaac 29006320  T
Q  227 aattcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaa-----------a 315  Q
     ||||||||||||| ||||  ||| | ||||||  ||||| ||||||||||||||||||  ||||| | ||||||||| || ||||||           |    
T  29006321 cattcatgaacaaaatcttttaaagggttgtttcccttcaccaaatgacataagtttctctataaatagagacactttagaagcagaacaaagatagaga 29006420  T
Q  316 agtattcagaaaatagagacaaa----atcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgagg 411  Q
    |  | |||||||| ||||| |||    |||||||||||||||||| ||||||||  ||||||||||||||||||||| || || | |||||||||||||     
T  29006421 aaaagtcagaaaa-agagataaattacatcacattcttgtgagtctaaattctgctaaaaattatactaaatcattcattcttttttctagtgcacgaga 29006519  T
Q  412 ggaattgacagaacattgttttgt-acactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggat 509  Q
      | |||||||||| || || ||| | |||| || || |||||| |||||||||||||||  | |||| ||||||||||||||||||  |||||| ||||    
T  29006520 taagttgacagaactttattctgtaaaactaacattg-acgatacgcttggtgtgaatgtgtatgtcatgtcaaggattccattgtattctgaagaggat 29006618  T
Q  510 tcgc 513  Q
    ||||    
T  29006619 tcgc 29006622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 129 - 285
Target Start/End: Complemental strand, 11043140 - 11042984
Alignment:
Q  129 ctgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaa 228  Q
    ||||| ||||||| |||||||||||| ||||||| ||  ||||||||| ||| ||||||||| ||||||||| || ||| | ||| || |||| || | |    
T  11043140 ctgagtgaaattttcaaaatatatttgaaaagtttcatcggttaaataaagatcttttagagaaaaggtgtaatgtttgtccatttaatcaatctagcca 11043041  T
Q  229 ttcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttct 285  Q
    ||||||||||||||||| |||| | ||| || ||| || |||| ||||| |||||||    
T  11043040 ttcatgaacaaactctttcaaagggttgattatctacaccaaaggacatgagtttct 11042984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 495
Target Start/End: Original strand, 36203051 - 36203209
Alignment:
Q  336 aaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgt 435  Q
    |||||||||||  |||||||| |||||||| | ||||||||||||||| |||| || |  ||| ||||| ||||| | | ||| |||||| || ||||||    
T  36203051 aaaatcacattggtgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacgagagaatttgtcagaactttattttgt 36203150  T
Q  436 acactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattg 495  Q
    |  |||||| || | ||||  |||| |||||| || ||||||||||||||||||| ||||    
T  36203151 aagctaccattgca-gatacacttgatgtgaacgtgcaagtcacgtcaaggattctattg 36203209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 28274195 - 28274097
Alignment:
Q  130 tgagagaaatttccaaaatata--tttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataac 226  Q
    ||||||||| ||||||||||||  |||  ||||||||||||||| ||||   ||||||||| | || | ||||||||||||| |||||| |||| ||||    
T  28274195 tgagagaaacttccaaaatataaatttggaaagttgcaatggttgaatatgaaccttttagtgaaacgatgtattgcttgactattgaaacaatgtaac 28274097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 15205185 - 15205241
Alignment:
Q  196 gtgtattgcttgacaattgaagcaatataacaattcatgaacaaactcttccaaatg 252  Q
    |||||||||  || |||||||||||| |||  |||||||||||||||||| ||||||    
T  15205185 gtgtattgcacgagaattgaagcaatgtaatcattcatgaacaaactcttacaaatg 15205241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 130 - 489
Target Start/End: Original strand, 217512 - 217861
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaat 229  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||| ||||||||| ||| | ||| | |||||||||  |||||||            
T  217512 tgagagaaatttccgaaatataataaaaaagttgcaatggttaaatagagatcttttagagaaaatgcgtaattcttgacaatcaaagcaat-------- 217603  T
Q  230 tcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcagaaa-a 328  Q
    ||||| |||||||||| |||| | |||||| |||| | ||||||||||||||||||  |||||  |||||||||| |||||||||||  ||||| ||  |    
T  217604 tcatggacaaactctttcaaaaggttgtttatctttaccaaatgacataagtttctctataaa--tagacactttagaggcagaaaataattcaaaagta 217701  T
Q  329 tagagacaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacatt 428  Q
    || | | ||||||||||| ||||| |||  ||||||| | ||||| || |||||| ||||||| || |||||||| |||||| | ||||| |||||||||    
T  217702 taaata-aaaatcacattgttgtgtgtcagaattctgccgaaaataattctaaataattctttcttttctctagttcacgagagaaattggcagaacatt 217800  T
Q  429 gttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggatt 489  Q
     ||||||| ||||||| ||| |||||  |||||||||||||| |||||| | |||||||||    
T  217801 attttgtaaactaccattgatcgatacacttggtgtgaatgtgcaagtctcttcaaggatt 217861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 215646 - 215699
Alignment:
Q  133 gagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagacctttt 186  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  215646 gagaaatttccaaaatatatttagaaagttgcaatggttaaatagagatctttt 215699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 147 - 527
Target Start/End: Complemental strand, 14219233 - 14218851
Alignment:
Q  147 atatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaattcatgaacaaactcttc 246  Q
    |||||||| ||| |||||||| |||||||||| | |||| |||| ||| ||| | ||||| |||||||||||||| |||    |||||||| |||||||     
T  14219233 atatatttgaaatgttgcaatagttaaatagaaatcttt-agagaaaatgtgcaatgctttacaattgaagcaatgtaatcggtcatgaaccaactcttt 14219135  T
Q  247 caaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcagaaaa-tagagacaaaa-tcaca 344  Q
    ||||   |||||| |||||| |||||| |||||||||||  ||||| | |||||||||||  ||||||||  ||||| |||| |||  |||||| |||||    
T  14219134 caaagtgttgtttctcttcaccaaatggcataagtttctctataaatagagacactttggcagcagaaaataattcaaaaaaataggtacaaaaatcaca 14219035  T
Q  345 ttcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactacca 444  Q
    || ||||||||| ||||| ||  |||||| ||||||||||||||||| || ||||||||||||||||  |||||| ||||| || ||||||| |||| ||    
T  14219034 ttattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgaggaaaattgaaagaactttattttgtaaactatca 14218935  T
Q  445 atgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgctgatataccctttt 527  Q
     |||  |||| | |||||||||||||||| |||| ||||  ||||| || ||| | |||||| |||||  |||||||| |||||    
T  14218934 ttgatggatacgtttggtgtgaatgtacatgtcaagtcagtgattctatagtatcttgaaggagattcattgatatactctttt 14218851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 130 - 478
Target Start/End: Complemental strand, 34681464 - 34681118
Alignment:
Q  130 tgagagaaatttccaaaatatatttaaaaagttgcaatggttaaatagagaccttttagagcaaaggtgtattgcttgacaattgaagcaatataacaat 229  Q
    |||||||||||| ||||||||||||  || ||||||||||||||| | | ||||||||||| ||| ||||| || ||||||||||||||||| | || ||    
T  34681464 tgagagaaattttcaaaatatatttggaatgttgcaatggttaaacataaaccttttagagaaaaagtgtaatgtttgacaattgaagcaatgttaccat 34681365  T
Q  230 tcatgaacaaactcttccaaatgattgtttttcttcatcaaatgacataagtttcttcataaagatagacactttggaggcagaaaagtattcagaaaat 329  Q
    | ||||||||||||||| |||   ||||||||||||  |||| ||||||| |||||  ||||| |  |||| |||  ||||| ||||  | | ||||||     
T  34681364 tgatgaacaaactcttcaaaagagttgtttttcttccccaaaagacataaatttctctataaatagggacattttttaggcataaaatcagttagaaaa- 34681266  T
Q  330 agagac--aaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacat 427  Q
    ||| ||  ||||||||||||||||||||| ||||| || | ||||| | ||    | ||||||| || ||||| ||| ||||| | |||||||| ||| |    
T  34681265 agacacagaaaatcacattcttgtgagtcaaaattatgccgaaaataacac---ctaattctttcttttctctggtgaacgagagaaattgacaaaactt 34681169  T
Q  428 tgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtca 478  Q
    | ||  ||| |||| || ||| ||||| ||||| ||||||||| |||||||    
T  34681168 tattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtca 34681118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 17862390 - 17862450
Alignment:
Q  323 agaaaatagagacaaaatcacattcttgtgagtcgaaattctgtcaaaaattatactaaat 383  Q
    |||||||||| |||||||| ||||||||||| || ||||| |||||||||| ||| |||||    
T  17862390 agaaaatagatacaaaatctcattcttgtgactcaaaattttgtcaaaaataatattaaat 17862450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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