View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_103 (Length: 249)
Name: NF3710_low_103
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_103 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29536517 - 29536265
Alignment:
| Q |
1 |
tatttcgatgcatctaactgtttcaacaaccacagttatttaagaattcaggttagaaatttcgcgcaggtagtgaagaaagaatacttgtttgttgagt |
100 |
Q |
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| T |
29536517 |
tatttcgatgcatctaactgtttcaacaaccacagttatttaagaattcaggttagaaatttcgcgcaggtagtgaagaaagaatacttgtttgttgagt |
29536418 |
T |
|
| Q |
101 |
agtgacaaacaaaaaaggttaccgccttcgagaatacttgtttaacttttaacccaactataagagtaatgaaga---------------agaataagga |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
29536417 |
agtgacaaacaaaaaaggttaccgccttcgagaatacttgtttaacttttaacccaactataagaggaatgaagaagaagaagaagaagaagaataagga |
29536318 |
T |
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| Q |
186 |
tccactgcaagtttcatggctaatctacaattctcctcgttttcgaccaccta |
238 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29536317 |
tccactgcaagtttcatggctaatctacaatcctcctcgttttcgaccaccta |
29536265 |
T |
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