View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_low_107 (Length: 240)
Name: NF3710_low_107
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_107 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 46667273 - 46667034
Alignment:
| Q |
1 |
aatttatcttggcttctggtggtgtatttgggtggaagatactaagtgatctaacgaagtcatcaaaataaatctttcctttcttcttgacatcaaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46667273 |
aatttatcttggcttctggtggtgtatttggggggaagatactaagtgatctaacgaagtcatcaaaataaatctttcctttcttcttgacatcaaatag |
46667174 |
T |
|
| Q |
101 |
atcaaacatctgcacgtttcaatattttgtattaatagatatatatagtcaatttaattaaaaggttagttcacaatatgaatgacataaaaaataatag |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46667173 |
atcaaagatctgcacgtttcaatattttgtattaatagatagatatagtcaatttaattaaaaggttagttcacaatatgaatgacataaaaaataatag |
46667074 |
T |
|
| Q |
201 |
tatagttattattaagaaagcaagagtatagtacccgatc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46667073 |
tatagttattattaagaaagcaagagtatagtacccgatc |
46667034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 41110882 - 41110972
Alignment:
| Q |
27 |
tttgggtggaagatactaagtgatctaacgaagtcatcaaaataaatctttcctttcttcttgacatcaaatagatcaaacatctgcacgt |
117 |
Q |
| |
|
||||||||||||| | | || |||||||||||||||||||||| ||| || ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
41110882 |
tttgggtggaagacattgagagatctaacgaagtcatcaaaatcaataacgcccttcctcttgacatcaaatagatcaaagatctgcacgt |
41110972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University