View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_low_113 (Length: 237)

Name: NF3710_low_113
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_low_113
NF3710_low_113
[»] chr6 (10 HSPs)
chr6 (1-222)||(29536914-29537135)
chr6 (52-140)||(14386612-14386700)
chr6 (52-140)||(16466206-16466294)
chr6 (52-140)||(16524562-16524650)
chr6 (46-143)||(32243298-32243395)
chr6 (52-140)||(3819751-3819839)
chr6 (52-140)||(10629361-10629449)
chr6 (52-140)||(21139798-21139886)
chr6 (52-140)||(24178376-24178464)
chr6 (52-140)||(34283492-34283580)
[»] scaffold0444 (1 HSPs)
scaffold0444 (52-140)||(7744-7832)
[»] chr8 (13 HSPs)
chr8 (52-140)||(1366895-1366983)
chr8 (52-140)||(4174684-4174772)
chr8 (46-140)||(41256245-41256339)
chr8 (34-110)||(34944131-34944207)
chr8 (53-140)||(28868871-28868958)
chr8 (46-140)||(3100317-3100411)
chr8 (34-92)||(40439758-40439816)
chr8 (63-140)||(16736477-16736554)
chr8 (63-140)||(16861793-16861870)
chr8 (52-140)||(7884333-7884421)
chr8 (52-140)||(37954214-37954302)
chr8 (52-140)||(43536852-43536940)
chr8 (52-140)||(45187061-45187149)
[»] chr4 (20 HSPs)
chr4 (52-140)||(23138184-23138272)
chr4 (52-140)||(23138366-23138454)
chr4 (52-140)||(10125525-10125613)
chr4 (52-140)||(13800479-13800567)
chr4 (52-140)||(22101064-22101152)
chr4 (12-80)||(28555036-28555104)
chr4 (52-140)||(30649630-30649718)
chr4 (34-101)||(31063623-31063690)
chr4 (63-140)||(39417959-39418036)
chr4 (52-140)||(41414110-41414199)
chr4 (63-140)||(52397736-52397813)
chr4 (52-129)||(55925810-55925887)
chr4 (52-140)||(288493-288581)
chr4 (52-140)||(16605336-16605424)
chr4 (52-140)||(22320678-22320766)
chr4 (52-140)||(27851316-27851404)
chr4 (52-140)||(38852681-38852769)
chr4 (52-140)||(43050314-43050402)
chr4 (52-140)||(52184004-52184092)
chr4 (52-140)||(56235298-56235386)
[»] chr3 (17 HSPs)
chr3 (52-140)||(38808236-38808324)
chr3 (52-140)||(47497949-47498037)
chr3 (52-140)||(14781042-14781130)
chr3 (52-140)||(22926185-22926273)
chr3 (52-140)||(34816949-34817037)
chr3 (52-140)||(43109741-43109829)
chr3 (52-140)||(43185493-43185581)
chr3 (52-140)||(49780271-49780359)
chr3 (52-129)||(44976450-44976527)
chr3 (83-140)||(46740989-46741046)
chr3 (63-140)||(47109107-47109184)
chr3 (63-140)||(51380073-51380150)
chr3 (52-140)||(9795302-9795390)
chr3 (52-140)||(29675008-29675096)
chr3 (52-140)||(41265660-41265748)
chr3 (52-140)||(48962613-48962701)
chr3 (52-140)||(52870482-52870570)
[»] chr1 (17 HSPs)
chr1 (52-140)||(52688287-52688375)
chr1 (46-140)||(7318621-7318715)
chr1 (68-137)||(6402259-6402328)
chr1 (63-140)||(20793497-20793574)
chr1 (52-140)||(6540508-6540596)
chr1 (52-140)||(8768493-8768581)
chr1 (52-140)||(31809619-31809707)
chr1 (52-140)||(42219631-42219719)
chr1 (52-140)||(45269017-45269105)
chr1 (52-140)||(46436326-46436414)
chr1 (52-140)||(48363415-48363503)
chr1 (52-140)||(50309750-50309838)
chr1 (64-157)||(3533403-3533496)
chr1 (19-140)||(4227863-4227983)
chr1 (63-140)||(39673542-39673619)
chr1 (52-140)||(2733990-2734078)
chr1 (52-140)||(35379558-35379646)
[»] chr7 (14 HSPs)
chr7 (82-139)||(33553751-33553809)
chr7 (52-140)||(12263799-12263887)
chr7 (52-140)||(31466197-31466285)
chr7 (52-140)||(32827148-32827236)
chr7 (52-140)||(40353678-40353766)
chr7 (52-140)||(40536829-40536917)
chr7 (52-140)||(40704537-40704625)
chr7 (52-140)||(43884170-43884258)
chr7 (52-134)||(17611355-17611437)
chr7 (52-140)||(21177360-21177448)
chr7 (46-110)||(23069969-23070033)
chr7 (52-140)||(24161783-24161871)
chr7 (64-140)||(39430242-39430318)
chr7 (52-140)||(48339595-48339683)
[»] chr2 (15 HSPs)
chr2 (46-140)||(41285648-41285742)
chr2 (52-140)||(2048042-2048130)
chr2 (52-140)||(21289000-21289088)
chr2 (52-140)||(30549614-30549702)
chr2 (52-140)||(37111046-37111134)
chr2 (52-140)||(37985672-37985760)
chr2 (63-140)||(38993645-38993722)
chr2 (52-140)||(11216741-11216829)
chr2 (52-140)||(22375063-22375151)
chr2 (52-140)||(29411979-29412067)
chr2 (52-140)||(36174104-36174192)
chr2 (52-140)||(40483440-40483528)
chr2 (63-143)||(42141810-42141890)
chr2 (52-140)||(43446682-43446770)
chr2 (52-140)||(43521438-43521526)
[»] chr5 (24 HSPs)
chr5 (63-140)||(39932970-39933047)
chr5 (52-140)||(2914572-2914660)
chr5 (52-140)||(4431661-4431749)
chr5 (52-140)||(5846851-5846939)
chr5 (52-140)||(19712631-19712719)
chr5 (52-140)||(22510549-22510637)
chr5 (52-140)||(32292602-32292690)
chr5 (52-140)||(32833713-32833801)
chr5 (52-140)||(38394171-38394259)
chr5 (52-140)||(39527580-39527668)
chr5 (50-140)||(14640045-14640135)
chr5 (46-140)||(39630656-39630749)
chr5 (63-140)||(7458736-7458813)
chr5 (83-140)||(16745468-16745525)
chr5 (52-140)||(8035892-8035980)
chr5 (52-140)||(9641168-9641256)
chr5 (52-140)||(18025944-18026032)
chr5 (52-140)||(18048723-18048811)
chr5 (52-140)||(24781009-24781097)
chr5 (52-140)||(29665463-29665551)
chr5 (52-140)||(32706880-32706968)
chr5 (52-128)||(33629783-33629859)
chr5 (52-140)||(40365336-40365424)
chr5 (52-140)||(40555218-40555306)
[»] scaffold0189 (1 HSPs)
scaffold0189 (52-140)||(13457-13545)
[»] scaffold0011 (1 HSPs)
scaffold0011 (52-140)||(1391-1479)
[»] scaffold0236 (1 HSPs)
scaffold0236 (52-140)||(20420-20508)
[»] scaffold0166 (1 HSPs)
scaffold0166 (52-140)||(23392-23480)
[»] scaffold0130 (1 HSPs)
scaffold0130 (52-140)||(22922-23010)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29536914 - 29537135
Alignment:
Q  1 aaagatgccctttactattttattattctttaattttccaattcgtttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29536914 aaagatgccctttactattttattattctttaattttccaattcgtttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcat 29537013  T
Q  101 attttttcttctccaaacaatattaattaaattttttaatttgaatcaaattgctaatgggaagaaggaagtagtttttaaactttatgccttccaaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29537014 attttttcttctccaaacaatattaattaaattttttaatttgaatcaaattgctaatgggaagaaggaagtagtttttaaactttatgccttccaaaag 29537113  T
Q  201 tctaaatagggcgaatatagtt 222  Q
    ||||||||||||||||||||||    
T  29537114 tctaaatagggcgaatatagtt 29537135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 14386612 - 14386700
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  14386612 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 14386700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 16466294 - 16466206
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  16466294 ttatctttttcataccatttatcaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 16466206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 16524650 - 16524562
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  16524650 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 16524562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 32243298 - 32243395
Alignment:
Q  46 tttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaatttg 143  Q
    ||||| |||||||| |  |||||||||||||||||  |||||||||||   | ||| ||| |||| | || |||| |||||||| |||||||||||||    
T  32243298 tttaatttatctttcatgtaccattaatgaaggataattttgtaaaattatttataatttctctttttcatacaacattaattacattttttaatttg 32243395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 3819751 - 3819839
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||| ||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  3819751 ttatcttttccatactatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 3819839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 10629449 - 10629361
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||| ||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  10629449 ttatctttttcatactatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 10629361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 21139886 - 21139798
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||||| |||||| ||| ||||| |||  |||||||||||| |||| |||||    
T  21139886 ttatcttttccataccatttattagggataattttgtaaaataactcataatttctcttccccacgcaatattaattagatttcttaat 21139798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 24178376 - 24178464
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  24178376 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 24178464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 34283492 - 34283580
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| |||  |||| ||| ||||||||||||| |||| |||||    
T  34283492 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttcacttccccacacaatattaattacatttcttaat 34283580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 7744 - 7832
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||||||||| ||| ||||||||||||| |||| |||||    
T  7744 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttttcttccccacacaatattaattacatttcttaat 7832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 1366895 - 1366983
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||||||||| ||| ||||||||||||| |||| |||||    
T  1366895 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttttcttccccacacaatattaattacatttcttaat 1366983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 4174684 - 4174772
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  ||||||||||||||||||| ||| ||||| | | ||||||||||||| |||| |||||    
T  4174684 ttatcttttccataccatttattaaggataattttgtaaaatagctcataatttctcttccctacacaatattaattacatttcttaat 4174772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 41256339 - 41256245
Alignment:
Q  46 tttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    ||||| |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  41256339 tttaatttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 41256245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 34944131 - 34944207
Alignment:
Q  34 ttttccaattcgtttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttctt 110  Q
    ||||||||||| ||||| |||| ||||  ||| |||||||||||||| |||| |||||||| |||||| || |||||    
T  34944131 ttttccaattcctttaatttatgttttccatatcattaatgaaggatattttagtaaaataactcataattattctt 34944207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 28868871 - 28868958
Alignment:
Q  53 tatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    ||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  28868871 tatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 28868958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 3100411 - 3100317
Alignment:
Q  46 tttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    ||||| |||||||||  |||||||||||||||||| |||| ||||||    ||||||||| ||||||| | || | |||||||| |||| |||||    
T  3100411 tttaatttatcttttttataccattaatgaaggatattttagtaaaacgattcatattttctcttctctataccacattaattacatttcttaat 3100317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 40439816 - 40439758
Alignment:
Q  34 ttttccaattcgtttaacttatcttttagataccattaatgaaggatctttttgtaaaa 92  Q
    ||||||||||| ||||| |||| ||||  ||||||||| |||||||| |||||||||||    
T  40439816 ttttccaattcttttaatttatgttttccataccattagtgaaggatatttttgtaaaa 40439758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 16736554 - 16736477
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||| || ||||||  |||||||||| | || ||| ||| ||||| ||| ||||||||||||| ||||||||||    
T  16736554 ataccatttattaaggataattttgtaaaacaacttataatttctcttccccacacaatattaattacattttttaat 16736477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 16861870 - 16861793
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  16861870 ataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattatatttcttaat 16861793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 7884421 - 7884333
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  7884421 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttatcttccccacacaatattaattacatttcttaat 7884333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 37954302 - 37954214
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||||| || ||| ||| ||||| ||| | ||||||||||| |||| |||||    
T  37954302 ttatcttttccataccatttattaaggataattttgtaaaataacttataatttctcttccccacataatattaattacatttcttaat 37954214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 43536940 - 43536852
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  43536940 ttatctttttcataccatttattagggataattttgtaaaacaactcataatttctcttccccacacaatattaattatatttcttaat 43536852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 45187061 - 45187149
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| |  ||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  45187061 ttatcttttccataccatttattaaggataattttgtaaaacaaatcataatttctcttccccacacaatattaattacatttcttaat 45187149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 23138184 - 23138272
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||||||| ||||||||||||| |||| |||||    
T  23138184 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttctccacacaatattaattacatttcttaat 23138272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 23138366 - 23138454
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||||||| ||||||||||||| |||| |||||    
T  23138366 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttctccacacaatattaattacatttcttaat 23138454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 10125613 - 10125525
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  10125613 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattatatttcttaat 10125525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 13800479 - 13800567
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  13800479 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 13800567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 22101064 - 22101152
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  22101064 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 22101152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 28555104 - 28555036
Alignment:
Q  12 ttactattttattattctttaattttccaattcgtttaacttatcttttagataccattaatgaaggat 80  Q
    |||||||||||||||||||| ||||| |||||| ||||| ||||||||   |||| |||| ||||||||    
T  28555104 ttactattttattattcttttatttttcaattcttttaatttatctttcctatactattagtgaaggat 28555036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 30649718 - 30649630
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  30649718 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 30649630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 31063623 - 31063690
Alignment:
Q  34 ttttccaattcgtttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcata 101  Q
    ||||||| ||| ||||| |||| ||||  ||||||||| |||||||| ||||||||||||| ||||||    
T  31063623 ttttccagttcttttaatttatgttttccataccattagtgaaggatatttttgtaaaataactcata 31063690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 39417959 - 39418036
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  39417959 ataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 39418036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 41414199 - 41414110
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaac-aatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||||| |||||| ||| ||||| ||| || ||||||||||| |||| |||||    
T  41414199 ttatctttttcataccatttattaaggataattttgtaaaataactcataatttctcttccccacacgaatattaattacatttcttaat 41414110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 52397813 - 52397736
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||| || ||||||  |||||||||| | |||||| ||| ||||| |||  |||||||||||| ||||||||||    
T  52397813 ataccatttattaaggataattttgtaaaacaactcataatttctcttccccacgcaatattaattacattttttaat 52397736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 55925810 - 55925887
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaatta 129  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| |||||||||||||    
T  55925810 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaatta 55925887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 288493 - 288581
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  288493 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 288581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 16605336 - 16605424
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||| | | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  16605336 ttatcttttccataccatttattaaggataattttgtaatacaactcataatttctcttccccacacaatattaattatatttcttaat 16605424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 22320678 - 22320766
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| |  ||||| ||| ||||| ||| ||||||||||||| ||||||||||    
T  22320678 ttatcttttccataccatttattatggataattttgtaaaacaattcataatttctcttccccacacaatattaattacattttttaat 22320766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 27851316 - 27851404
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| |||  |||  ||| ||||||||||||| ||||||||||    
T  27851316 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttcactttcccacacaatattaattacattttttaat 27851404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 38852769 - 38852681
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  38852769 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 38852681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 43050314 - 43050402
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||  ||| ||||||||||||| |||| |||||    
T  43050314 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctctttcccacacaatattaattacatttcttaat 43050402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 52184004 - 52184092
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| |||||  || ||||||||||||| |||| |||||    
T  52184004 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttcctcacacaatattaattacatttcttaat 52184092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 56235298 - 56235386
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| |||  |||| ||| ||||||||||||| |||| |||||    
T  56235298 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttcacttccccacacaatattaattacatttcttaat 56235386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 38808236 - 38808324
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||||| || ||| ||||||||| ||| ||||||||||||| |||| |||||    
T  38808236 ttatcttttccataccatttattaaggataattttgtaaaataactaataatttttcttccccacacaatattaattatatttcttaat 38808324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 47498037 - 47497949
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| |||||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  47498037 ttatcttttccataccatttattaaggataattttgtaaaacagctcataatttctcttccccacacaatattaattacatttcttaat 47497949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 14781042 - 14781130
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  14781042 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 14781130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 22926185 - 22926273
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  22926185 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 22926273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 34817037 - 34816949
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  34817037 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 34816949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 43109741 - 43109829
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  43109741 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 43109829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 43185493 - 43185581
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  43185493 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 43185581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 49780359 - 49780271
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  49780359 ttatcttttctataccatttattaaggataattttgtaaaacaactcataatttatcttccccacacaatattaattacatttcttaat 49780271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 44976450 - 44976527
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaatta 129  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| |||||||||||||    
T  44976450 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaatta 44976527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 46741046 - 46740989
Alignment:
Q  83 ttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||| | |||||| ||| ||||| ||| ||||||||||||| ||||||||||    
T  46741046 ttttgtaaaacaactcataatttctcttccccacacaatattaattacattttttaat 46740989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 47109184 - 47109107
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  47109184 ataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 47109107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 51380150 - 51380073
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  51380150 ataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattatatttcttaat 51380073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 9795302 - 9795390
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| | ||||||||||| |||| |||||    
T  9795302 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacataatattaattacatttcttaat 9795390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 29675008 - 29675096
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  29675008 ttatcttttccataccatttattatggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 29675096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 41265660 - 41265748
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||| ||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  41265660 ttatcttttccatacaatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 41265748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 48962701 - 48962613
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||| ||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  48962701 ttatcttttccatacaatttattaaggataattttgtaaaacaactcataatttatcttccccacacaatattaattacatttcttaat 48962613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 52870570 - 52870482
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| |  ||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  52870570 ttatcttttccataccatttattaaggataattttgtaaaacaattcataatttctcttccccacacaatattaattacatttcttaat 52870482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 52688287 - 52688375
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| |||||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  52688287 ttatcttttccataccatttattaaggataattttgtaaaacagctcataatttctcttccccacacaatattaattacatttcttaat 52688375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 7318715 - 7318621
Alignment:
Q  46 tttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    ||||| |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  7318715 tttaatttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 7318621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 6402259 - 6402328
Alignment:
Q  68 attaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaatttttt 137  Q
    |||||| |||||| ||||||||||||| |||||| || |||||||| | |||| |||||||| |||||||    
T  6402259 attaataaaggatgtttttgtaaaataactcataattattcttctctatacaacattaattatatttttt 6402328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 20793497 - 20793574
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||| || ||||||  |||||||||||| |||||| ||| ||||||| |  |||||||||||| ||||||||||    
T  20793497 ataccatttattaaggataattttgtaaaataactcataatttctcttctctacgcaatattaattacattttttaat 20793574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 6540596 - 6540508
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  6540596 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 6540508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 8768581 - 8768493
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||||| |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  8768581 ttatcttttccataccatttattatggataattttgtaaaataactcataatttctcttccccacacaatattaattacatttcttaat 8768493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 31809619 - 31809707
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| | ||||||||    
T  31809619 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacaatttttaat 31809707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 42219719 - 42219631
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  42219719 ttatctttttcataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 42219631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 45269105 - 45269017
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  45269105 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 45269017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 46436414 - 46436326
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  46436414 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattatatttcttaat 46436326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 48363503 - 48363415
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  48363503 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 48363415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 50309838 - 50309750
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  50309838 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 50309750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 3533403 - 3533496
Alignment:
Q  64 taccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaatttgaatcaaattgctaa 157  Q
    ||||||||||||||| |  |||||||||||  || ||| ||| | || |||| ||||||||||||| |||| |||||||| || ||||| ||||    
T  3533403 taccattaatgaagggtaattttgtaaaattacttataatttcttttttccatacaatattaattacatttcttaatttgtatgaaattactaa 3533496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 4227863 - 4227983
Alignment:
Q  19 tttattattctttaattttccaattcgtttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaac 118  Q
    ||||||| |||||  |||| |||||| ||||| |||||||||  ||| |||| || ||||||  |||||||||| | |||||| | | ||||  ||| ||    
T  4227863 tttattactctttcttttttcaattc-tttaatttatcttttccatatcatttattaaggataattttgtaaaacaactcataatatctctttcccatac 4227961  T
Q  119 aatattaattaaattttttaat 140  Q
    ||||||||||| ||||||||||    
T  4227962 aatattaattacattttttaat 4227983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 39673619 - 39673542
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||| || ||||||  |||||||||| | |||||| ||||||||  ||| ||||||||||||| |||| |||||    
T  39673619 ataccatttattaaggataattttgtaaaacaactcataatttttctttcccacacaatattaattacatttcttaat 39673542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 2733990 - 2734078
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| || || ||| ||||||||||||| |||| |||||    
T  2733990 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcgtccccacacaatattaattacatttcttaat 2734078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 35379646 - 35379558
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  35379646 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 35379558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 33553809 - 33553751
Alignment:
Q  82 tttttgtaaaatagctcatattttttc-ttctccaaacaatattaattaaattttttaa 139  Q
    |||||||||||| |||||||||||||| |||| || ||||||||||||| |||||||||    
T  33553809 tttttgtaaaatcgctcatattttttcattcttcatacaatattaattatattttttaa 33553751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 12263799 - 12263887
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  12263799 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 12263887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 31466197 - 31466285
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  31466197 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 31466285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 32827236 - 32827148
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  32827236 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 32827148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 40353766 - 40353678
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  40353766 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 40353678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 40536917 - 40536829
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  40536917 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 40536829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 40704537 - 40704625
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  40704537 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattatatttcttaat 40704625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 43884258 - 43884170
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | || ||| ||| ||||| ||||||||||||||||| |||| |||||    
T  43884258 ttatcttttccataccatttattaaggataattttgtaaaacaactgataatttctcttccccaaacaatattaattacatttcttaat 43884170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 17611437 - 17611355
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattt 134  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| ||||    
T  17611437 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacattt 17611355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 21177360 - 21177448
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | || ||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  21177360 ttatcttttccataccatttattaaggataattttgtaaaacaactaataatttctcttccccacacaatattaattacatttcttaat 21177448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 23070033 - 23069969
Alignment:
Q  46 tttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttctt 110  Q
    ||||| |||||||||  |||||||||||||| |||  |||||||||||| || ||| ||||||||    
T  23070033 tttaatttatcttttttataccattaatgaaagataattttgtaaaataacttataatttttctt 23069969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 24161783 - 24161871
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| |||||  || ||||||||||||| |||| |||||    
T  24161783 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttcctcacacaatattaattatatttcttaat 24161871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 39430242 - 39430318
Alignment:
Q  64 taccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    ||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  39430242 taccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 39430318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 48339595 - 48339683
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | || ||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  48339595 ttatcttttccataccatttattaaggataattttgtaaaacaacttataatttctcttccccacacaatattaattacatttcttaat 48339683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 41285742 - 41285648
Alignment:
Q  46 tttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    ||||| |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| | | ||||||||||||| ||||||||||    
T  41285742 tttaatttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccctacacaatattaattacattttttaat 41285648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 2048130 - 2048042
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  2048130 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccatacaatattaattacatttcttaat 2048042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 21289000 - 21289088
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| | ||||||| ||||||||||||| |||| |||||    
T  21289000 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttcttttctccacacaatattaattacatttcttaat 21289088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 30549702 - 30549614
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  30549702 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 30549614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 37111134 - 37111046
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  37111134 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 37111046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 37985672 - 37985760
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  37985672 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattatatttcttaat 37985760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 38993645 - 38993722
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  38993645 ataccatttattaaggataattttgtaaaacaactcataatttctcttccccatacaatattaattacatttcttaat 38993722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 11216741 - 11216829
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  11216741 ttatcttttccataccatttattatggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 11216829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 22375151 - 22375063
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || || |||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  22375151 ttatcttttccataccatttattaaagataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 22375063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 29411979 - 29412067
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  29411979 ttatcttttttataccatttattagggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 29412067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 36174104 - 36174192
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  36174104 ttatctttttcataccatttattagggataattttgtaaaacaactcataatttctcttccccacacaatattaattatatttcttaat 36174192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 40483528 - 40483440
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  40483528 ttatctttttcataccatttattatggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 40483440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 42141890 - 42141810
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaatttg 143  Q
    ||||| ||||||||||||  |||||||||||  || ||| ||| |||| |||| ||||||||||||| | || ||||||||    
T  42141890 ataccgttaatgaaggataattttgtaaaatgacttataatttatcttttccatacaatattaattacacttcttaatttg 42141810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 43446682 - 43446770
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | || ||| ||| ||||| | ||||||||||||||| |||| |||||    
T  43446682 ttatcttttccataccatttattaaggataattttgtaaaacaactgataatttctcttccctaaacaatattaattacatttcttaat 43446770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 43521526 - 43521438
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||| ||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  43521526 ttatcttttccatacaatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 43521438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 39932970 - 39933047
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||| || ||||||  |||||||||||| |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  39932970 ataccatttattaaggataattttgtaaaataactcataatttctcttccccacacaatattaattatatttcttaat 39933047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 2914572 - 2914660
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  2914572 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 2914660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 4431661 - 4431749
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  4431661 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 4431749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 5846939 - 5846851
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  5846939 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 5846851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 19712631 - 19712719
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  19712631 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 19712719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 22510549 - 22510637
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  22510549 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 22510637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 32292602 - 32292690
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||||||| ||||||||||||| |||| |||||    
T  32292602 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttctccacacaatattaattatatttcttaat 32292690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 32833713 - 32833801
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| ||||||||||    
T  32833713 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttccccacacaatattaattacattttttaat 32833801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 38394259 - 38394171
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  38394259 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 38394171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 39527580 - 39527668
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  39527580 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 39527668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 14640135 - 14640045
Alignment:
Q  50 acttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| |||||||||  |||||||||||| |||| |||||    
T  14640135 acttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttctccacgcaatattaattacatttcttaat 14640045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 39630656 - 39630749
Alignment:
Q  46 tttaacttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    ||||| |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  39630656 tttaatttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttc-ccacacaatattaattacatttcttaat 39630749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 7458736 - 7458813
Alignment:
Q  63 ataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  7458736 ataccatttattaaggataattttgtaaaacaactcataatttatcttccccacacaatattaattacatttcttaat 7458813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 16745468 - 16745525
Alignment:
Q  83 ttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||| | |||||| | |||||| |||||||||||||||||| |||| |||||    
T  16745468 ttttgtaaaacaactcataatatttcttttccaaacaatattaattacatttcttaat 16745525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 8035892 - 8035980
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  8035892 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttccccatacaatattaattacatttcttaat 8035980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 9641168 - 9641256
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| |||  |||| ||| ||||||||||||| |||| |||||    
T  9641168 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttcacttccccacacaatattaattacatttcttaat 9641256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 18026032 - 18025944
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||| |||||||| || | ||||  |||||||||| | |||||| ||| ||||| |||  |||||||||||| |||| |||||    
T  18026032 ttatcttttacataccatttattagggataattttgtaaaacaactcataatttctcttccccacgcaatattaattacatttcttaat 18025944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 18048723 - 18048811
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  ||||||||  | ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  18048723 ttatcttttccataccatttcttaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 18048811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 24781097 - 24781009
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||  |||||||||||||||||| |||||    
T  24781097 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttccccgcacaatattaattaaatttcttaat 24781009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 29665463 - 29665551
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | || ||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  29665463 ttatcttttccataccatttattaaggataattttgtaaaacaacttataatttctcttccccacacaatattaattacatttcttaat 29665551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 32706880 - 32706968
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  || ||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  32706880 ttatcttttccatgccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 32706968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 33629859 - 33629783
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaatt 128  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||    
T  33629859 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaatt 33629783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 40365424 - 40365336
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  40365424 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttccccatacaatattaattacatttcttaat 40365336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 40555218 - 40555306
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| |||||  || ||||||||||||| |||| |||||    
T  40555218 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttcctcacacaatattaattacatttcttaat 40555306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 13457 - 13545
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| ||||||||||    
T  13457 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttccccacacaatattaattacattttttaat 13545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 1391 - 1479
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||| ||| ||||||||||||| |||| |||||    
T  1391 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttccccacacaatattaattacatttcttaat 1479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 20420 - 20508
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| |||||  || ||||||||||||| |||| |||||    
T  20420 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttcctcacacaatattaattacatttcttaat 20508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 23480 - 23392
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || | ||||  |||||||||| | |||||| ||| ||||| ||  |||||||||||||||||| |||||    
T  23480 ttatcttttccataccatttattagggataattttgtaaaacaactcataatttctcttccccgcacaatattaattaaatttcttaat 23392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 23010 - 22922
Alignment:
Q  52 ttatcttttagataccattaatgaaggatctttttgtaaaatagctcatattttttcttctccaaacaatattaattaaattttttaat 140  Q
    |||||||||  |||||||| || ||||||  |||||||||| | |||||| ||| ||||  ||| ||||||||||||| |||| |||||    
T  23010 ttatcttttccataccatttattaaggataattttgtaaaacaactcataatttctcttacccacacaatattaattacatttcttaat 22922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University