View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_low_114 (Length: 236)

Name: NF3710_low_114
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_low_114
NF3710_low_114
[»] chr2 (7 HSPs)
chr2 (1-221)||(11729430-11729650)
chr2 (1-221)||(11720316-11720536)
chr2 (1-216)||(11693448-11693663)
chr2 (1-216)||(11681076-11681291)
chr2 (1-195)||(11672186-11672380)
chr2 (1-95)||(11712601-11712695)
chr2 (161-221)||(11712540-11712600)
[»] chr1 (1 HSPs)
chr1 (5-193)||(7662287-7662475)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11729430 - 11729650
Alignment:
Q  1 taactccccatggtgctatatcgacacgagccattgagatccctagtgtgttcaatcctggaagctgagctgcaaagactggagtcactctagacccagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11729430 taactccccatggtgctatatcgacacgagccattgagatccctagtgtgttcaatcctggaagctgagctgcaaagactggagtcactctagacccaac 11729529  T
Q  101 agggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaattccctaacatcgtt 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  11729530 tgggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttttggatccttgcatactgaattccctaacattgtt 11729629  T
Q  201 acaattgatagaggaacaaaa 221  Q
    |||||||||||||||||||||    
T  11729630 acaattgatagaggaacaaaa 11729650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11720316 - 11720536
Alignment:
Q  1 taactccccatggtgctatatcgacacgagccattgagatccctagtgtgttcaatcctggaagctgagctgcaaagactggagtcactctagacccagc 100  Q
    |||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || |||| ||||||||||||||| ||||| ||||||||    
T  11720316 taacaccccatggtgctatgtcgacacgagccatggagattcctagtgtgttcaatcctggtagttgagatgcaaagactggagttactcttgacccagc 11720415  T
Q  101 agggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaattccctaacatcgtt 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||     
T  11720416 agggttagtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttttggatccttgcataatgaattccctaacattgtc 11720515  T
Q  201 acaattgatagaggaacaaaa 221  Q
    |||| ||||||||||| ||||    
T  11720516 acaaatgatagaggaaaaaaa 11720536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11693663 - 11693448
Alignment:
Q  1 taactccccatggtgctatatcgacacgagccattgagatccctagtgtgttcaatcctggaagctgagctgcaaagactggagtcactctagacccagc 100  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||||| |    
T  11693663 taacaccccatggtgctatatcaacacgagccattgagatccctagtgtgttcaatcctcgtagctgagatgcaaagactggagtcactcttgacccaac 11693564  T
Q  101 agggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaattccctaacatcgtt 200  Q
    ||  || ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||    
T  11693563 agcattagtagtgttgcctgctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttttggatccttgcatactgaattccctaacattctt 11693464  T
Q  201 acaattgatagaggaa 216  Q
    |||| |||||||||||    
T  11693463 acaaatgatagaggaa 11693448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11681076 - 11681291
Alignment:
Q  1 taactccccatggtgctatatcgacacgagccattgagatccctagtgtgttcaatcctggaagctgagctgcaaagactggagtcactctagacccagc 100  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||||| |    
T  11681076 taacaccccatggtgctatatcaacacaagccattgagatccctagtgtgttcaatcctcgtagctgagatgcaaagactggagtcactcttgacccaac 11681175  T
Q  101 agggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaattccctaacatcgtt 200  Q
    |   || ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||     
T  11681176 aacattagtagtgttgcctgctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttttggatccttgcatactgaattccctaacattgtc 11681275  T
Q  201 acaattgatagaggaa 216  Q
    |||| |||||||||||    
T  11681276 acaaatgatagaggaa 11681291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 11672186 - 11672380
Alignment:
Q  1 taactccccatggtgctatatcgacacgagccattgagatccctagtgtgttcaatcctggaagctgagctgcaaagactggagtcactctagacccagc 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| | ||||||||    
T  11672186 taacaccccatggtgctatatcgacacgagccattgagatccctagtgtgttcaatccaggtagctgagctgcaaagactggagttacttttgacccagc 11672285  T
Q  101 agggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaattccctaaca 195  Q
    ||  || ||||||||||| |||||||||||||||||||| | ||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  11672286 agcattagtagtgttgcctgctatgtgaaggccactaaagaagaagtcatttgcctcaacaagtttaggatccttgcataatgaattccctaaca 11672380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11712695 - 11712601
Alignment:
Q  1 taactccccatggtgctatatcgacacgagccattgagatccctagtgtgttcaatcctggaagctgagctgcaaagactggagtcactctagac 95  Q
    |||| ||||| ||||||||||||| | ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  11712695 taacgccccaaggtgctatatcgatatgagtcattgagatccctaatgtgttcaatcctggtagctgagctgcaaagactggagttactctagac 11712601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 11712600 - 11712540
Alignment:
Q  161 aagttttggatccttgcatactgaattccctaacatcgttacaattgatagaggaacaaaa 221  Q
    |||||| ||||||||||||| ||||||||| ||||| || |||| ||||||||||||||||    
T  11712600 aagtttaggatccttgcataatgaattcccaaacattgtcacaaatgatagaggaacaaaa 11712540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 7662287 - 7662475
Alignment:
Q  5 tccccatggtgctatatcgacacgagccattgagatccctagtgtgttcaatcctggaagctgagctgcaaagactggagtcactctagacccagcaggg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||||||||||||| ||||||||||||| |||     
T  7662287 tccccatggtgctatatcgacacgagccattgagatccctagtgtattcagtccgggtagctgagctgcaaagactggagttactctagacccagtagga 7662386  T
Q  105 tttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaattccctaa 193  Q
    ||||| |||||||| |||||||||||| ||||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  7662387 tttgtggtgttgcctgctatgtgaaggacactaaaaaagaagtcatttgcctcaacaagtttaggatccttgcatactgaattccctaa 7662475  T

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