View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_115 (Length: 236)
Name: NF3710_low_115
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_115 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 3230 - 3422
Alignment:
| Q |
36 |
cactcacaagtgttagttagcttagaccctctccaaaaaataaaagtgttagcttagaaattacaattgaattgtgtgaatgcatatatgaagattaaat |
135 |
Q |
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| T |
3230 |
cactcacaagtgttagttagcttaaaccctctccaaaaaa-aaaagtgttagcttaaaaattacaattgaattgtgtgaatgcatatttaaagattaaat |
3328 |
T |
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| Q |
136 |
tcaatttttattaccaa---nnnnnnnnatgcaattaggaagtttttattgaaattttgtttatcactttcaatttcacctctgtccttctgtg |
226 |
Q |
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| T |
3329 |
tcaatttttattaccaatttttttttttatgcaattaggaagtttttattgaaattttgtttatcactttcaatttcacctctgtccttctgtg |
3422 |
T |
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