View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_12 (Length: 518)
Name: NF3710_low_12
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41315505 - 41315726
Alignment:
| Q |
1 |
aatatgaagaaagaaaaagcactagagattttatatttagagtccattagtgattttcaagaacaccaaataaattatatagttcatggtgtatcaacaa |
100 |
Q |
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| T |
41315505 |
aatatgaagaaagaaaaagcactagagattttatatttagagtccattagtgattttcaagaacaccaaataaattatatagttcatggtgtatcaacaa |
41315604 |
T |
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| Q |
101 |
atttttgggtatgggatagatttgaatcagcgtagacatgttggtagacatattgccaccgaataggtcctattttgagaacacaatacattttacagct |
200 |
Q |
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| T |
41315605 |
atttttgggtatgagatagatttgaatcggcgtagacatgttggtagacatattgccaacgaataggtcctattttgagaacacaacacattttacagct |
41315704 |
T |
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| Q |
201 |
tatgtatgaaaaagctatttct |
222 |
Q |
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| T |
41315705 |
tatgtataaaaaagctatttct |
41315726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 251 - 502
Target Start/End: Original strand, 41315755 - 41315995
Alignment:
| Q |
251 |
gcttgttttcataagctactatgaagagtttatgnnnnnnnnttgaaatccaattattaacacatcataagttgttttcataagttatcaagatgatgtc |
350 |
Q |
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| T |
41315755 |
gcttgttttcataagctactatgaagagtttatg-----------aaaaaaaattgttaacacatcataagttgttttcataagttatcaagatgatgtc |
41315843 |
T |
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| Q |
351 |
acaaagtgtttatgccaatgtggcaatgacattatataagttcaaataatcaatccaaagattcaatccaaacatgcccaaaatttaacccttttctttt |
450 |
Q |
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| T |
41315844 |
acaaagtgtttatgccaatgtggcaatgacattatataagttcaaataatcaatccaaagattcaatccaaacatgcccaaaatttaacccttttctttt |
41315943 |
T |
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| Q |
451 |
ttgagaaacatgcttatgtttcttaatcttatgcttggattgttgtgattat |
502 |
Q |
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| T |
41315944 |
ttgagaaacatgcatatgtttcttaatcttatgcttggattgttgtgattat |
41315995 |
T |
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