View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_120 (Length: 233)
Name: NF3710_low_120
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_120 |
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| [»] scaffold1437 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 32350234 - 32350029
Alignment:
| Q |
19 |
tcatacacacccttaatacaaaacatttcattcccatagctaccttttcccctaaacacttcaaagatggcgaattctcgcattgcaaggtttttcatgg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32350234 |
tcatacacacccttaatacaaaacatttcattcccatagctaccttttcccctaaacacttcaaagatggcgaattctcgcattgcaaggtttttcatgg |
32350135 |
T |
|
| Q |
119 |
aggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaagatgatggaaacaattactgaagaggatatggaaatgagctcaaatgatag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32350134 |
aggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaatgatgatggaaacaattactgaagaggatatggaaatgagctcaaatgatag |
32350035 |
T |
|
| Q |
219 |
tataat |
224 |
Q |
| |
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| |||| |
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| T |
32350034 |
tgtaat |
32350029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 32343033 - 32342903
Alignment:
| Q |
85 |
atggcgaattctcgcattgcaaggtttttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaagatgatggaaacaatta |
184 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
32343033 |
atggcaaattctcgcattgcaaggtttttcatggaggtagcaccaccacagtatgttagcgtgatgaggcatagaacatcaaagatgatggaaacaatca |
32342934 |
T |
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| Q |
185 |
ctgaagaggatatggaaatgagctcaaatga |
215 |
Q |
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| T |
32342933 |
ccgaagatgatagggaaatcaactcaaatga |
32342903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 3215453 - 3215350
Alignment:
| Q |
93 |
ttctcgcattgcaaggtttttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaagatgatggaaacaattactgaagag |
192 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
3215453 |
ttctcgcgttgcaaggtttttcatggaggtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagag |
3215354 |
T |
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| Q |
193 |
gata |
196 |
Q |
| |
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|||| |
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| T |
3215353 |
gata |
3215350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 34011836 - 34011967
Alignment:
| Q |
93 |
ttctcgcattgcaaggtttttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaagatgatggaaacaattactgaagag |
192 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
34011836 |
ttctcgcgttgcaaggtttttcatggaggtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagag |
34011935 |
T |
|
| Q |
193 |
gatatggaaatgagctcaaatgatagtataat |
224 |
Q |
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|||| |||||| | |||| |||||||| |||| |
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| T |
34011936 |
gatagggaaattaactcacatgatagtgtaat |
34011967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 33149178 - 33149309
Alignment:
| Q |
93 |
ttctcgcattgcaaggtttttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaagatgatggaaacaattactgaagag |
192 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
33149178 |
ttctcgcgttgcaaggtttttcatggaggtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagag |
33149277 |
T |
|
| Q |
193 |
gatatggaaatgagctcaaatgatagtataat |
224 |
Q |
| |
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|||| |||||| | |||| |||||||| |||| |
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| T |
33149278 |
gatagggaaattaactcacatgatagtgtaat |
33149309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 93 - 217
Target Start/End: Original strand, 33139168 - 33139292
Alignment:
| Q |
93 |
ttctcgcattgcaaggtttttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaagatgatggaaacaattactgaagag |
192 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||| |||||| || ||||||| ||| ||||||| ||||||||||||||||| |||||| |
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| T |
33139168 |
ttctcgcattgcaagattttttatggaggtggcaccaccacaatatgtttctgttatgaggcaaagagcatcaaatatgatggaaacaattaccgaagag |
33139267 |
T |
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| Q |
193 |
gatatggaaatgagctcaaatgata |
217 |
Q |
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|||| ||||| |||||| |||||| |
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| T |
33139268 |
gatagagaaattagctcacatgata |
33139292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 33142879 - 33142969
Alignment:
| Q |
91 |
aattctcgcattgcaaggtttttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaagatgatggaaacaa |
181 |
Q |
| |
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|||||||| ||| ||||||||||||| | |||||||||||||| |||||| |||||||||| |||||||||||| ||||| ||||||| |
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| T |
33142879 |
aattctcggattataaggtttttcatgaaagtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaatatgattgaaacaa |
33142969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1437 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold1437
Description:
Target: scaffold1437; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 616 - 726
Alignment:
| Q |
93 |
ttctcgcattgcaaggtttttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaagatgatggaaacaattactgaagag |
192 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |
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|
| T |
616 |
ttctcgcgttgcaaggtttttcatggaggtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagag |
715 |
T |
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| Q |
193 |
gatatggaaat |
203 |
Q |
| |
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|||| |||||| |
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|
| T |
716 |
gatagggaaat |
726 |
T |
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