View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_124 (Length: 229)
Name: NF3710_low_124
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_124 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 3948242 - 3948041
Alignment:
| Q |
18 |
tgatgctatatatgttatatcaataaaagtagaaaaagaaaacaagagatgcatgacataactgtgccttactatgaaagtgagagaaagtaacaaaaga |
117 |
Q |
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| T |
3948242 |
tgatgctatatatgttatatcaataaaagtagaaaaagaaaacaagagatgcatgacataactgtgccttcctatgaaagtgagcaaaagtaacaaaaga |
3948143 |
T |
|
| Q |
118 |
atgtgggagcaataacaaaattgtacaactactacgtagatagagtgtgaaagagaaataagaaaagtgtgatcattattg--agaggtaaaatcacagg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3948142 |
atgtgggagcaataacaaaattgtacaactactacgtagatagagtgtgaaagagaaataagaaaagtgtgatcattattgagagaggtaaaatcacagg |
3948043 |
T |
|
| Q |
216 |
tt |
217 |
Q |
| |
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|| |
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| T |
3948042 |
tt |
3948041 |
T |
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