View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_low_125 (Length: 227)
Name: NF3710_low_125
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_125 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 1489165 - 1488947
Alignment:
| Q |
4 |
attcttgccttcattctcccattgattcaacacagaagcagaacccaattcaggattctccatcattgaaatcctcctgtgtatagctttccaatgcaaa |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| | |||| |
|
|
| T |
1489165 |
attcctgccttcattctcccattgattcaacacagaagcagaacccaattcaggattctccatcattgaaatcctcttgtatatagcattccatttcaaa |
1489066 |
T |
|
| Q |
104 |
ttgggttttctctcataatcaagtggaccataattgtgaatctttgagattgaacaagtgacagaaacccttgctcctcctccaattacactgtcagtgt |
203 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
1489065 |
ttgggttttctctcataatcaagtgtaccataattgtgaatctttgagattgaacaagtgacagaaactcttgctccacctccaattccactgtcagtgt |
1488966 |
T |
|
| Q |
204 |
aaaagacattgaccctttg |
222 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1488965 |
aaaagacattgaccctttg |
1488947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 11834293 - 11834479
Alignment:
| Q |
4 |
attcttgccttcattctcccattgattcaacacagaagcagaacccaattcaggattctccatcattgaaatcctcctgtgtatagctttccaatgcaaa |
103 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||| ||||| | |||| |
|
|
| T |
11834293 |
attcctgccttcattctcccattgattcaacacagaagcagaacccaattcaggattctgcatcattgaaattctcttgtatatagcattccatttcaaa |
11834392 |
T |
|
| Q |
104 |
ttgggttttctctcataatcaagtggaccataattgtgaatctttgagattgaacaagtgacagaaacccttgctcctcctccaatt |
190 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
11834393 |
ttgggttttctctcataatcaagagtaccataattgtgaatctttgaaattgaacaagtgacagaaactcttcttgctcctccaatt |
11834479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 9033892 - 9033831
Alignment:
| Q |
8 |
ttgccttcattctcccattgattcaacacagaagcagaacccaattcaggattctccatcat |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9033892 |
ttgccttcattctcccattgattcaacacagaagcagaactcaattcaggattctccatcat |
9033831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University