View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_13 (Length: 503)
Name: NF3710_low_13
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 87 - 484
Target Start/End: Complemental strand, 32267846 - 32267452
Alignment:
| Q |
87 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
186 |
Q |
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| T |
32267846 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
32267747 |
T |
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| Q |
187 |
tacatattcggtggatgtaaagaattgnnnnnnnnnnnnnnnnncctaccgtacgtgggttctaaaattcggcacttttgatagtacattgaaacgttgg |
286 |
Q |
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| T |
32267746 |
tacatattcggtggatgtaaagaatt-ttttattttttatttttcctac----cgtgggttctaaaattcggcagttttgatagtacattgaaacgttgg |
32267652 |
T |
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| Q |
287 |
gtcatggtaaaatttcagtcctaaaatttgatgtgtcatttattggatgtcatttggtttgtacctaacaaaggtgtgatcg--nnnnnnnnaatataag |
384 |
Q |
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| T |
32267651 |
gtcatggtaaaatttcagtcctaaaatttgatgtgtcatttattggatgtcatttggttggtacctaacaaaggtgtgatcgttttttttttaatataag |
32267552 |
T |
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| Q |
385 |
aaaccactttattaagaagaatgcaagacatattcaatctcaaattaaaccagtgtgcagactttatagtcaaactaggagcttcaaatgatgatgatct |
484 |
Q |
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| T |
32267551 |
aaaccactttattaagaagaatgcaagacatattcaatctcaaattaaaccggtgtgcatactttgtagccaaactaggagcttcaaatgatgatgatct |
32267452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 32272030 - 32271836
Alignment:
| Q |
7 |
tcgaagaatatcataacactttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaaatatgattcttcatg |
106 |
Q |
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| T |
32272030 |
tcgaacaatatcataacactttcttacaattatttgttgtgtcattttggaactactatttagtgatttcttcaagtttctatagatatga---ttcatg |
32271934 |
T |
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| Q |
107 |
aatagttttggagaatggataaaagtgttcatatatgta--gagtgtagcaagataaattacggtagacatatttttatcattacatattcggtggatgt |
204 |
Q |
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| T |
32271933 |
aata-ttttggagaatggataaaagggttcatttatgtattgagtgtagcaagataaattattgtatacatatttttatc--tacatattcggtggatgt |
32271837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 32271809 - 32271744
Alignment:
| Q |
240 |
cgtgggttctaaaattcggcacttttgatagtacattgaaacgttgggtcatggtaaaatttcagtcct |
308 |
Q |
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| T |
32271809 |
cgtgggttctaaaattcggcacttttgata---cattcaaacgttgggccatggtaaaatttcagtcct |
32271744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 32267901 - 32267860
Alignment:
| Q |
7 |
tcgaagaatatcataacactttcttacaattatttatcgtgt |
48 |
Q |
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| T |
32267901 |
tcgaacaatatcataacactttcttacaattatttatcgtgt |
32267860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 324
Target Start/End: Original strand, 14446615 - 14446684
Alignment:
| Q |
252 |
aattcggcacttttgatagtacattgaaacgttgggtcatggtaaaatttcagtcctaaaatttgatgtgtca |
324 |
Q |
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| T |
14446615 |
aattcggcacttatgata---cattcaaacgttggaccatggtaaaatttcagtccttcaatttgaggtgtca |
14446684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 48170048 - 48169925
Alignment:
| Q |
13 |
aatatcataacactttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaaatatgattcttcatgaata-g |
111 |
Q |
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||||| |||||| ||||||||||||||||||| |||| ||| | || ||| || | |||||||||||||||| || |||||||| |||||||||| |
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| T |
48170048 |
aatattataacagtttcttacaattatttatcatgtctttttgaaactaccatccaatgattccttctaggttttataaatatga---ttcatgaatatt |
48169952 |
T |
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| Q |
112 |
ttttggagaatggataaaagtgttcat |
138 |
Q |
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| T |
48169951 |
ttttggagaaaggactaaagtgttcat |
48169925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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