View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_14 (Length: 503)
Name: NF3710_low_14
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_14 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: scaffold0198 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 4 - 495
Target Start/End: Original strand, 4034 - 4524
Alignment:
| Q |
4 |
tcataacaatattttagtgtcaaaattagtatgtttttgataagtttagtaacgagttgaagaaactagcaagacaatcaaggaccgcattgaaggcctt |
103 |
Q |
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|||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4034 |
tcataacaatattttagtgtcaaatttagcatgttttagataagtttagtaacgagttgaagaaactagcaagacaatcaaggaccgcattgaaggcctt |
4133 |
T |
|
| Q |
104 |
tgaaccagattgaattcatcctaactagacaactttgtagtcgtgctatactttttacaagatgtatcaaatcatcaattgaggaatagtcattacggac |
203 |
Q |
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| T |
4134 |
tgaaccagattgaattcatcctaactagacaactttgtaatcgtgctataatttttacaagatgtatcaagtcatcaattgaggaatagtcactacggac |
4233 |
T |
|
| Q |
204 |
atttttggtgaagtgaaatagaacaaatagtgaagaaaattgtgataccatctgctggaagctgcgcatcatgtacaagtagcgtgcacgtcgccccgtg |
303 |
Q |
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| T |
4234 |
atttt-ggtgaagtgaaatagaacaaatagtgaagaaaattatgataccatctgctggaagctgcgcatcatgtacaagtagcgtgtacgtcgccccgtg |
4332 |
T |
|
| Q |
304 |
tcttcaactgagctcccttcctttgatgcagttgaatttctagcaaaatcgattgtgctaccaacatgaaacctatcaatttcatatcacgcgaagttaa |
403 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4333 |
tcttcaactgagctcccttcctttgatgctgttgaatttctagcagaatcgattgtgctaccaacatgaaacctatcaatttcatatcacgcgaagttaa |
4432 |
T |
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| Q |
404 |
tcggtttcgtatattttgaacttgaggagagttttgaatactagaagattctactatgtaaccattcaactcttgataattaagtgatgatg |
495 |
Q |
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| T |
4433 |
tcggtttcgtagattttgaacttgaggagagttttgaatactagaagattctactatgtaaccattcaactcttgataattaagtgatgatg |
4524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 317 - 495
Target Start/End: Original strand, 16401247 - 16401426
Alignment:
| Q |
317 |
tcccttcctttgatgcagttgaatttctagcaaaatcgattgtgctaccaacatgaaacctatcaatttca-tatcacgcgaagttaatcggtttcgtat |
415 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||||| |||| |||||||||| || |
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| T |
16401247 |
tcccttcctttgatgcagttgaatttctagcagaatcaattgtgctaccaacatgaaacctatcgatttcactatcactcgaaaccaatcggtttcttag |
16401346 |
T |
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| Q |
416 |
attttgaacttgaggagagttttgaatactagaagattctactatgtaaccattcaactcttgataattaagtgatgatg |
495 |
Q |
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||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16401347 |
attatgaacttgaggagaattttgaatactagaggattctactatgtaaccattcaactcttgagaattaagtgatgatg |
16401426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 33870595 - 33870628
Alignment:
| Q |
130 |
agacaactttgtagtcgtgctatactttttacaa |
163 |
Q |
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| T |
33870595 |
agacaactttgtggtcgtgctatactttttacaa |
33870628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 317 - 489
Target Start/End: Complemental strand, 14305698 - 14305525
Alignment:
| Q |
317 |
tcccttcctttgatgcagttgaatttctagcaaaatcgattgtgctaccaacatgaaacctatcaatttcat-atcacgcgaagttaatcggtttcgtat |
415 |
Q |
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||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||| |
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| T |
14305698 |
tcccttcctttgaagcagttgaatttctagcagaatcagttgtgctaccaacatgaaacctatcaatttcaccatcactcgaaattaatcggttacgtgg |
14305599 |
T |
|
| Q |
416 |
attttgaacttgaggagagttttgaatactagaagattctactatgtaaccattcaactcttgataattaagtg |
489 |
Q |
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||| ||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||| ||||||||| |
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| T |
14305598 |
attatgaacttgaggagagttttgaatactacaaggttctactaggtatccattcaactcttgagaattaagtg |
14305525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 8988023 - 8988099
Alignment:
| Q |
94 |
tgaaggcctttgaaccagattgaattcatcctaactagacaactttgtagtcgtgctatactttttacaagatgtat |
170 |
Q |
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| T |
8988023 |
tgaagacctttgaatcagatcgaattcaccctaacaagacaatttcatggtcatggtatactttttacaatatgtat |
8988099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 37086976 - 37087030
Alignment:
| Q |
119 |
tcatcctaactagacaactttgtagtcgtgctatactttttacaagatgtatcaa |
173 |
Q |
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|||||||||| | |||||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
37086976 |
tcatcctaaccaaacaactttgttgtcatgctatattttttacaagatgtatcaa |
37087030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 2570320 - 2570365
Alignment:
| Q |
119 |
tcatcctaactagacaactttgtagtcgtgctatactttttacaag |
164 |
Q |
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| T |
2570320 |
tcatccaaactagacaactttgtggtcatgctatactttttacaag |
2570365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 6723909 - 6723941
Alignment:
| Q |
140 |
gtagtcgtgctatactttttacaagatgtatca |
172 |
Q |
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| T |
6723909 |
gtagtcgtgctatacttttaacaagatgtatca |
6723941 |
T |
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