View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_15 (Length: 491)
Name: NF3710_low_15
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 102 - 483
Target Start/End: Complemental strand, 6639365 - 6638985
Alignment:
| Q |
102 |
gtataactccatctctgtaaaacaacgtcgcacaatattattacgtataccctaggtctatacatagaaaaatggcatcccaataaattgtggttcaaga |
201 |
Q |
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| T |
6639365 |
gtataactccatctctgtaaaacaacgtcgcacaatattattacgtataccttaggtctatacatagcaaaatggcatcccaataaattgtggttcaaga |
6639266 |
T |
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| Q |
202 |
ggaggcccatccgaactcacccaccgttagatgagttaaacgatgccagtcaatcgaaatcgaaagattgggcgggtcgcggctgaggttgaaaccctat |
301 |
Q |
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| T |
6639265 |
ggaggcccatccaaactcacccaccgttaaatgagttaaatgatgccagtcaatcgaaacccaaagattgggcgg-tcgcggctgaggctgaaaccctat |
6639167 |
T |
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| Q |
302 |
ccaccccttcccattaatatattgttgatgttgattgttgatacgaagctctacaacttctcaaaggtttagattgctacctagtggtgcaccttatcaa |
401 |
Q |
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| T |
6639166 |
ccaccccttcccattaatatattgttgatgttgattgttgatacgaagctctacaacttctcaaaggtttagattgccacctagtggtgcaccttatcaa |
6639067 |
T |
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| Q |
402 |
ctgaaacatacacaaatgtaatgacttcttagcctctttgggtcataaggtcttgtttagtttctgctcttatgagtattat |
483 |
Q |
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| T |
6639066 |
ctgaaacatacacaaatgtattgacttcttagcctctttgggtcataagatcttgtttggtttctgctcttatgagtattat |
6638985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 6639502 - 6639404
Alignment:
| Q |
1 |
atgataggaatattaacctgatttggttcgagtctaagaggaagttgatggaggaaaaataggagattg--agaggttagatgaagggagagcgacgca |
97 |
Q |
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| T |
6639502 |
atgataggaatattaacctgatttggtttgagtctaagaggaagttgatggaggaaaaataggagattgagagaggttagatgaagggagagcgacgca |
6639404 |
T |
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