View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_18 (Length: 486)
Name: NF3710_low_18
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 309 - 471
Target Start/End: Original strand, 45105476 - 45105638
Alignment:
| Q |
309 |
tgttacaataacatgatgataagaaaaaacaatatatttacttttgggtatatgtgatattgacttcttttcttttgcgacgtactaattatcttaaagt |
408 |
Q |
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| T |
45105476 |
tgttacgataacatgatgataagaaaaaacaatatatttacttttgggtatatgtgatattgacttcttttcttttgcgacgtactaattatcttaaagt |
45105575 |
T |
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| Q |
409 |
atcattaacatactgaattgattatgcataaatgaattaatagatggacaagacctctatact |
471 |
Q |
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| T |
45105576 |
atcattaacatactgaattgattatgcataaattaattaatagatggacaagacctctatact |
45105638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 45105182 - 45105270
Alignment:
| Q |
24 |
ggattaccatattttaatgtataaatatgatatttaaaagtttaagtaaatcgtactgttactagaaatagtaaatgtccaccgtttac |
112 |
Q |
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| T |
45105182 |
ggattaccatattttaatgtataaatatgatatttaaaagtttaagtaaatcgtactgttactagaaatagtaaaagtctaccgtttac |
45105270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 45105339 - 45105400
Alignment:
| Q |
178 |
aatggtgcactaagacgagaagcaaaccaacgtcaaacttagatgaaattgtgaacaagttt |
239 |
Q |
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| T |
45105339 |
aatggtgcactaagacgagaagaaaaccaacgtcaaacttagatgaaattgtgaacaagttt |
45105400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 471
Target Start/End: Original strand, 45131869 - 45131934
Alignment:
| Q |
405 |
aagtatcattaacatactgaattgattatgcataaatgaattaatagatggacaagacctctatact |
471 |
Q |
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| T |
45131869 |
aagtagcattaacatattgaat-gattttgcataaattaattaatagatggacaagaactatatact |
45131934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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