View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_low_2 (Length: 807)

Name: NF3710_low_2
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_low_2
NF3710_low_2
[»] chr3 (7 HSPs)
chr3 (6-529)||(884742-885264)
chr3 (712-790)||(885683-885761)
chr3 (447-525)||(883012-883090)
chr3 (613-659)||(885380-885426)
chr3 (471-525)||(884292-884346)
chr3 (32-70)||(884727-884765)
chr3 (377-414)||(19357427-19357464)
[»] chr6 (1 HSPs)
chr6 (377-415)||(28146860-28146898)
[»] chr8 (1 HSPs)
chr8 (377-415)||(5559730-5559768)
[»] chr7 (1 HSPs)
chr7 (377-414)||(19804374-19804411)
[»] chr5 (1 HSPs)
chr5 (377-414)||(41530365-41530402)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 529
Target Start/End: Original strand, 884742 - 885264
Alignment:
Q  6 agaagcaaaggaggaacatgtgaaacaaatgggccaagtgaagaaggaaaggaggaacacgtgaaggagaggaagaagaaaatggattttgattcttacc 105  Q
    ||||| |||||||||||| |||||| |||||||  |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||     
T  884742 agaaggaaaggaggaacacgtgaaagaaatgggttaagtgaagaaagaaatgaggaacacgtgaaggagaggaagaagaaaatgaattttgattcttact 884841  T
Q  106 gtaaa----------------gaaaaatcaagaaacttttgtcttatataaaaatatccacaagtggaaaggacccttttgccctttttaaagtcataag 189  Q
    |||||                |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  884842 gtaaaaaaaagggatagtgaagaaaaatcaagaaacttttgtcttatataaaagtatccacaagtggaaaggacccttttgccctttttaaagtcataag 884941  T
Q  190 cttcaattaccaaataacc--attctcttgaaggttgctgagatacacttaaagacaccaataactgactatgttttaagcgggatatttcattccct-t 286  Q
    |||||||||||||||||||  |||||| ||||||||||| | ||  ||||||||||       |||||| |||||||||||||||||||||||||||| |    
T  884942 cttcaattaccaaataaccatattctcatgaaggttgctcatatgtacttaaagac-------actgaccatgttttaagcgggatatttcattccctgt 885034  T
Q  287 agcccgttggaataatataattcgatcctnnnnnnnnnntgttatgcacaattaccattatgtccttctctnnnnnnnttctaagggtagaataaatgat 386  Q
     | |||||||||||||||| ||| || ||          ||||||||||||||||||||||| ||||||||       |||  ||| |||||||| |||     
T  885035 ggtccgttggaataatatagttctattct----gaaaagtgttatgcacaattaccattatgcccttctctaaaaaaattcctaggatagaataattga- 885129  T
Q  387 actgaatttttacatgcgggatattacaaaatagattgtcattttgtgtcaattgattaataatgtgagcggaactctcacctaaaatttaatcattgtt 486  Q
            |||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  885130 --------tttacatgcaagatattacaaaatagattgtcatttcgtgtcaattgattaataatgtgagtgtaactctcacctgaaatttaatcattgtt 885221  T
Q  487 tcactacgttgcaaatagggtgtttgcattcaaaacaaattgc 529  Q
    ||||| |||||||||||||||||||||||||||| ||||||||    
T  885222 tcactgcgttgcaaatagggtgtttgcattcaaaccaaattgc 885264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 712 - 790
Target Start/End: Original strand, 885683 - 885761
Alignment:
Q  712 tcttattatagttaatattatatacattactcttaagttaaagttccctatataagcataagccatcctcatgtgtttt 790  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  885683 tcttattatagttaatattatatacattactcttaagttaaatttccctatataagcataagccatcctcatgtgtttt 885761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 447 - 525
Target Start/End: Original strand, 883012 - 883090
Alignment:
Q  447 taatgtgagcggaactctcacctaaaatttaatcattgtttcactacgttgcaaatagggtgtttgcattcaaaacaaa 525  Q
    ||||||||||| ||||||||||| ||||||||||||  |||||||  |||| ||||||||||||| |||||||| ||||    
T  883012 taatgtgagcgtaactctcacctgaaatttaatcatcatttcactcagttgtaaatagggtgtttacattcaaaccaaa 883090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 613 - 659
Target Start/End: Original strand, 885380 - 885426
Alignment:
Q  613 catacatttcaattataatcgactattttcattcttaaaattgttag 659  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  885380 catacatttcaattataatcgactattttcattcctaaaattgttag 885426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 884292 - 884346
Alignment:
Q  471 aaatttaatcattgtttcactacgttgcaaatagggtgtttgcattcaaaacaaa 525  Q
    ||||||||||||||||||||| | ||||||||| ||||||| |||||||||||||    
T  884292 aaatttaatcattgtttcacttctttgcaaataaggtgtttacattcaaaacaaa 884346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 884727 - 884765
Alignment:
Q  32 aaatgggccaagtgaagaaggaaaggaggaacacgtgaa 70  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  884727 aaatgggtcaagtgaagaaggaaaggaggaacacgtgaa 884765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 19357464 - 19357427
Alignment:
Q  377 aataaatgatactgaatttttacatgcgggatattaca 414  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  19357464 aataactgatactgaatttttacatgcgggttattaca 19357427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 415
Target Start/End: Original strand, 28146860 - 28146898
Alignment:
Q  377 aataaatgatactgaatttttacatgcgggatattacaa 415  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  28146860 aataactgatactgaatttttacatgcgggatattacaa 28146898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 415
Target Start/End: Original strand, 5559730 - 5559768
Alignment:
Q  377 aataaatgatactgaatttttacatgcgggatattacaa 415  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  5559730 aataactgatactgaatttttacatgcgggttattacaa 5559768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 19804374 - 19804411
Alignment:
Q  377 aataaatgatactgaatttttacatgcgggatattaca 414  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  19804374 aataactgatactgaatttttacatgcggggtattaca 19804411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 41530365 - 41530402
Alignment:
Q  377 aataaatgatactgaatttttacatgcgggatattaca 414  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  41530365 aataattgatactgaatttttacatgcgggttattaca 41530402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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