View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_20 (Length: 476)
Name: NF3710_low_20
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 459
Target Start/End: Original strand, 48307567 - 48308009
Alignment:
| Q |
13 |
aatatgtcggtttaacttttttgtacacttgatcaccaatttaatgtcggggaccaaagtggctaacggattttgaagttatgaaccgtctcgtattttg |
112 |
Q |
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| T |
48307567 |
aatatgtcggttcaatttttttatacacttgatcaccaatttaatgtcggggatcaaagtggcttacggattttagagttatgaaccgttttgtattttg |
48307666 |
T |
|
| Q |
113 |
ttacgagtcatagatcattatgagagcgagctgcccatagaccaannnnnnnnnnnnnnnaaagaattgaccaaaatgttgtttaacaaaaatatgtctc |
212 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48307667 |
ttacgagtcatagatcattatgagagtgagctgcacatagaccaattttttttttg----aaagaattgaccaaaatgttgtttaacaaaaatatgtctc |
48307762 |
T |
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| Q |
213 |
taaaaccgagaactaaatttatcaatgttaaattagtggccttaaaatcgttgctattgttaggtatcaaattaaataacgtttttctaatttctaacta |
312 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
48307763 |
taaaactgataactaaatttatcaatgttaaattagtggccttaaaatcgttgctattgttaggtatctaattagataacgtttttctaatttctaacta |
48307862 |
T |
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| Q |
313 |
aaaagatatctataattcggcccttaaagtgtttagtgaccatttttgtgaattgtgatatagtggttgaatgttaggtgtctaattaaataacgttttt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48307863 |
aaaagatatctataattcggcccttaaagtgtttagtgaccatttttgtgaattgtgatatagtggttgaatgttaggtgtctaattaaataacgttttt |
48307962 |
T |
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| Q |
413 |
ctaatagtacttgttttcagcaagtttattgttattaggaaaatgtc |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48307963 |
ctaatagtacttgttttcagcaagtttattgttattaggaaaatgtc |
48308009 |
T |
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