View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_22 (Length: 473)
Name: NF3710_low_22
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 37877423 - 37877890
Alignment:
| Q |
1 |
tctgtatattgaacaacaaaagtcatggtcattggtcatggtggtgttcagttcatagaggacgctttcaaagttcaagcggcagtgaagaatggtattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37877423 |
tctgtatattgaacaacaaaagtcatggtcattggtcatggtggtgttcagttcatagaggacgctttcaaagttcaagcggcagtgaagaatggtattt |
37877522 |
T |
|
| Q |
101 |
tgtcatactaacagaagtaattatgattaagacaataatcatattaacagaagtaattaagatgacaatgaaatcaaatggaaagttttaagtgaaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37877523 |
tgtcatactaacagaagtaattatgattaagacaataatcatattaacagaagtaattaagatgacaatgaaattaaatggaaagttttaagtgaaatag |
37877622 |
T |
|
| Q |
201 |
agtacagtagtacgcgtcaaagaacttattttggcattctggacactaaattacagaacatat----------------------ttcaatgttcaactt |
278 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37877623 |
agtacagta---cgcgtcaaagaacttattttggcattctggacactaaattacagaacatatttcaatggtacttcaatgaaagttcaatgttcaactt |
37877719 |
T |
|
| Q |
279 |
ttatgtatg------ccccatatgctctatgtacttgttattggaaaatgttaacattgataaaacaatatttcaatcaatttgtgatgacacatatata |
372 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37877720 |
gtatgtatgcctatgccccatatgctctatgtactagttattggaaaatgttaacattgataaaacaatatttcaatcaatttgtgatgacaaatatata |
37877819 |
T |
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| Q |
373 |
gttaagacatatgtggtatagtaaagttattgcatatactgtatgcacctgaccattttttggaaggttgt |
443 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37877820 |
gttaagacatatgtggtatagtaaagttattgcatatactgtatgcacctgaccattttttggaaggttgt |
37877890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 23894258 - 23893791
Alignment:
| Q |
1 |
tctgtatattgaacaacaaaagtcatggtcattggtcatggtggtgttcagttcatagaggacgctttcaaagttcaagcggcagtgaagaatggtattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23894258 |
tctgtatattgaacaacaaaagtcatggtcattggtcatggtggtgttcagttcatagaggacgctttcaaagttcaagcggcagtgaagaatggtattt |
23894159 |
T |
|
| Q |
101 |
tgtcatactaacagaagtaattatgattaagacaataatcatattaacagaagtaattaagatgacaatgaaatcaaatggaaagttttaagtgaaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
23894158 |
tgtcatactaacagaagtaattatgattaagacaataatcatattaacagaagtaattaagatgacaatgaaattaaatggaaagttttaagtgaaatag |
23894059 |
T |
|
| Q |
201 |
agtacagtagtacgcgtcaaagaacttattttggcattctggacactaaattacagaacatat----------------------ttcaatgttcaactt |
278 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23894058 |
agtacagta---cgcgtcaaagaacttattttggcattctggacactaaattacagaacatatttcaatggtacttcaatgaaagttcaatgttcaactt |
23893962 |
T |
|
| Q |
279 |
ttatgtatgcc------ccatatgctctatgtacttgttattggaaaatgttaacattgataaaacaatatttcaatcaatttgtgatgacacatatata |
372 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23893961 |
gtatgtatgcctatgccccatatgctctatgtactagttattggaaaatgttaacattgataaaacaatatttcaatcaatttgtgatgacaaatatata |
23893862 |
T |
|
| Q |
373 |
gttaagacatatgtggtatagtaaagttattgcatatactgtatgcacctgaccattttttggaaggttgt |
443 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23893861 |
gttaagacatatgtggtatagtaaagttattgcatatactgtatgcacctgaccattttttggaaggttgt |
23893791 |
T |
|
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