View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_24 (Length: 466)
Name: NF3710_low_24
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 10 - 448
Target Start/End: Complemental strand, 39132194 - 39131756
Alignment:
| Q |
10 |
catcatcaatatattgctactttatgatatgatcctgaacaaaatctacaaactgcaacataatttcactttatcaaaactaaccagtttctgccataaa |
109 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39132194 |
catcttcaatatattgttactttatgatatgatcctgaacaaaatctacaaactgcaacataatttcactttatcaaaactaaccagtttctgccataaa |
39132095 |
T |
|
| Q |
110 |
atcagttctagtttaactaaaactaagagattgggctgaataataacatataccaggggaagaaaagaaaacacctcagaccatacaaaaagtctatttc |
209 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39132094 |
atcagttccagtttaactaaaactaagagattgggctgaataataacatataccaggggaagaaaagaaaacgcctcagaccatacaaaaagtctatttc |
39131995 |
T |
|
| Q |
210 |
attttccaagtattagccaaaatttcaattttctctgaacaaatgagagataactcttggagaacttctgcatcaagcgtatgaaactaattacataaac |
309 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39131994 |
attttccaagtattagccaaaatttcaattttctccgaacaaatgagagataactcttggagaacttctgcatcaagcgtatgaagctaattacataaac |
39131895 |
T |
|
| Q |
310 |
tttgcgaacaaaactgtggcaatgaactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaaattaaaaatgaac |
409 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39131894 |
tttgcgaacaaaactgtggcaatgtactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaaattaaaaatgaac |
39131795 |
T |
|
| Q |
410 |
aatatacaatagaaaggaaagaaagaatagtgacccaaa |
448 |
Q |
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| T |
39131794 |
aatatacaatagaaaggaaagaaagaatagtgacccaaa |
39131756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 199 - 425
Target Start/End: Complemental strand, 39126106 - 39125888
Alignment:
| Q |
199 |
aagtctatttcattttccaagtattagccaaaatttcaattttctctgaacaaatgagagataactcttggagaacttc--tgcatcaagcgtatgaaac |
296 |
Q |
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|||| |||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||| |
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| T |
39126106 |
aagtttatttcattttccaagcattggccaagatttcaattttctcttaacaaatgagagataactcttggacaactacactgcatcaagc--------- |
39126016 |
T |
|
| Q |
297 |
taattacataaactttgcgaacaaaactgtggcaatgaactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaa |
396 |
Q |
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|||||||||||| ||||| ||||||| ||||||| || |||||||| | ||| |||| |||||||||| ||| |||||||||| |||||||||||||||| |
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| T |
39126015 |
taattacataaaatttgcaaacaaaagtgtggca-tgtactctaaatagctaatttgtatatgaaaacatttatgcatatcaagtttaagcctttgagaa |
39125917 |
T |
|
| Q |
397 |
attaaaaatgaacaatatacaatagaaag |
425 |
Q |
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| T |
39125916 |
attaaaaacaaacaatatacaatagaaag |
39125888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 206 - 409
Target Start/End: Original strand, 39470516 - 39470717
Alignment:
| Q |
206 |
tttcattttccaagtattagccaaaatttcaattttctctgaacaaatgagagataactcttggagaacttctgcatcaagcgtat-gaaactaattaca |
304 |
Q |
| |
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|||||||||||||| |||| ||| ||||||| |||||| |||||||||||||| | ||||| |||||| ||||||||| |||| ||| ||||||||| |
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| T |
39470516 |
tttcattttccaagcattaatcaagatttcaactttctcggaacaaatgagagaaa--tcttgaggaacttttgcatcaagtgtattgaagctaattaca |
39470613 |
T |
|
| Q |
305 |
taaactttgcgaacaaaactgtggcaatgaactctaaaaaactagtttgcatatgaaaacgttt-ctgcatatcaaatttaagcctttgagaaattaaaa |
403 |
Q |
| |
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|||| ||| |||||||| |||||| || |||| ||| |||||||||| ||||||||| ||| || | |||||| |||||||||||||||||||||| |
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| T |
39470614 |
aaaacattgtgaacaaaagcgtggca-tgtactccaaataactagtttgt-tatgaaaacattttctacgcatcaaacttaagcctttgagaaattaaaa |
39470711 |
T |
|
| Q |
404 |
atgaac |
409 |
Q |
| |
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|||||| |
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|
| T |
39470712 |
atgaac |
39470717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 39492498 - 39492573
Alignment:
| Q |
15 |
tcaatatattgctactttatgatatgatcctgaacaaaatctacaaactgcaacataatttcactttatcaaaact |
90 |
Q |
| |
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|||||||||||||||||| |||| || ||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
39492498 |
tcaatatattgctactttctgatgacattctgaacaaaatctacaagctgcaacaaaatttcactttatcaaaact |
39492573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 39470309 - 39470398
Alignment:
| Q |
47 |
aacaaaatctacaaactgcaacataatttcactttatcaaaactaaccagtttctgccataaaatcagttctagtttaactaaaactaagag |
138 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||||||| ||||||||| ||| | |||||||||||||| ||| ||||||||||| ||||| |
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| T |
39470309 |
aacaaaatctacaaggtgcaacaaaatttcactttatcataactaacca-tttattccataaaatcagttatag-ttaactaaaaccaagag |
39470398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 39503680 - 39503739
Alignment:
| Q |
198 |
aaagtctatttcattttccaagtattagccaaaatttcaattttctctgaacaaatgaga |
257 |
Q |
| |
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|||||||||||||||||||||| ||||||||| || ||| ||||||| ||||||||||| |
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|
| T |
39503680 |
aaagtctatttcattttccaagcattagccaagataccaaatttctcttaacaaatgaga |
39503739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 2363602 - 2363524
Alignment:
| Q |
15 |
tcaatatattgctactttatgatatgatcctgaacaaaatctacaaactgcaacataatttcactttatcaaaactaac |
93 |
Q |
| |
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||||||||||||| ||| |||||| ||| ||||||||||||| ||| |||| | |||||||||| |||||||||||| |
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| T |
2363602 |
tcaatatattgctgcttcatgataagattctgaacaaaatctgcaaggtgcaggaaaatttcacttcatcaaaactaac |
2363524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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