View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_low_27 (Length: 461)
Name: NF3710_low_27
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 10389152 - 10389595
Alignment:
| Q |
1 |
caagaggctctaaattactactcaattgagtcctcaatagcacttttaatcaccttagtaataaacctatttgtgataaccgtttttgctagagtattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10389152 |
caagaggctctaaattactactcaattgagtcctcaatagcactattaatcaccttagtaataaatctatttgtgataaccgtttttgctagagtattct |
10389251 |
T |
|
| Q |
101 |
atgatactgaacaagccaaagacataggattagtaaatgcaggacaatatcttgaagaaaaatatggtggagggttctttccaattctatatatttgggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10389252 |
atgatactgaacaagccaaagacataggattagtaaatgcaggacaatatcttgaagaaaaatatggtggagggttctttccaattctttatatttgggg |
10389351 |
T |
|
| Q |
201 |
tattggtttattagcagctggtcaaagtagcacaattactggtacctatgctggtcaatttataactgagggatttttaaaattgaatatnnnnnnntgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10389352 |
tattggtttattagcagctggtcaaagtagcacaattactggtacctatgctggtcaatttataactgagggatttttaaaattgaatataaaaaaatgg |
10389451 |
T |
|
| Q |
301 |
ttaagggcattgatcactagaagttgtgctattgttccaactatgattgtagcaattgtttttaatacttcagaaggttcattggatactttgaatgaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10389452 |
ttaagggcattgatcactagaagttgtgctattgttccaactatgattgtagcaattgtttttaatacttcagaaggttcattggatactttgaatgaat |
10389551 |
T |
|
| Q |
401 |
ggcttaatgtgcttcaagcaatacaaattccttttgcacttatt |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10389552 |
ggcttaatgtgcttcaagcaatacaaattccttttgcacttatt |
10389595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 123 - 438
Target Start/End: Original strand, 47292086 - 47292401
Alignment:
| Q |
123 |
cataggattagtaaatgcaggacaatatcttgaagaaaaatatggtggagggttctttccaattctatatatttggggtattggtttattagcagctggt |
222 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || |||||||| ||||| |||| || ||||| ||||| ||||| ||||| ||| | || || || |
|
|
| T |
47292086 |
cataggattagtaaatgcagggcaatatcttgaggagaaatatggaggaggactcttccctattctttatatatggggaattgggttactggcggccgga |
47292185 |
T |
|
| Q |
223 |
caaagtagcacaattactggtacctatgctggtcaatttataactgagggatttttaaaa-ttgaatatnnnnnnntggttaagggcattgatcactaga |
321 |
Q |
| |
|
||||||||||| || ||||| || |||||||| ||||| |||| | ||| || |||| || || | ||||| || |||||||||||| | |
|
|
| T |
47292186 |
caaagtagcactatcactggcacatatgctgggcaattcataatggggggtttcctaaaccttcgat-taaagaaatggttgagagcattgatcactcgg |
47292284 |
T |
|
| Q |
322 |
agttgtgctattgttccaactatgattgtagcaattgtttttaatacttcagaaggttcattggatactttgaatgaatggcttaatgtgcttcaagcaa |
421 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| ||||||| ||| | ||||||| ||||||||| ||||||||||||||| ||||||||||| | | |
|
|
| T |
47292285 |
agttgtgcaattgtgccaactataattgtagctattgtttataacaggtcagaagcctcattggatgttttgaatgaatggctcaatgtgcttcagtcca |
47292384 |
T |
|
| Q |
422 |
tacaaattccttttgca |
438 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
47292385 |
tacaaattccctttgca |
47292401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 5803524 - 5803445
Alignment:
| Q |
181 |
ccaattctatatatttggggtattggtttattagcagctggtcaaagtagcacaattactggtacctatgctggtcaatt |
260 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
5803524 |
ccaatcctgtatatatggggtattgggttattagcagctggtcaaagtagcactattactggtacatatgctggacaatt |
5803445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 39674016 - 39674089
Alignment:
| Q |
190 |
tatatttggggtattggtttattagcagctggtcaaagtagcacaattactggtacctatgctggtcaatttat |
263 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
39674016 |
tatatatggggtattgggttgttagcagctggtcaaagtagcactataactggtacttatgctggacaatttat |
39674089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University