View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_28 (Length: 456)
Name: NF3710_low_28
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 2572168 - 2572609
Alignment:
| Q |
1 |
acgttcaaggggaatggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgactttaattgttatatgtaca |
100 |
Q |
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| T |
2572168 |
acgttcaaggggaatggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgactttaattgttatatgtaca |
2572267 |
T |
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| Q |
101 |
cgtcaagttaccccccattccatattttataatctttctcatacacattcactactttgtacattcctatcctatttgaggtaatggtagttaggcatag |
200 |
Q |
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| T |
2572268 |
cgtcaagttaccccccattccatattttataatctttctcatacacatgcactactttgtacattcctatcctatttgaggtaatggtagttaggcatag |
2572367 |
T |
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| Q |
201 |
ttaggcaactgccatattttttcctactataaataccagaaagtttcgttgaatatcatgcagacttagaaacttaatagaaccatcatgaggtgcagtt |
300 |
Q |
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| T |
2572368 |
ttaggcaactgccatattttttcctactataaataccagaaagtttagttgaatatcatgcagacttagaaacttaatagaaccatcatgaggtgcagtt |
2572467 |
T |
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| Q |
301 |
tgttgatcaatagtttgatcttgttatttgtcatgggtagttggaatggattattagccataacggatgatgaattcattagtacaaattcctcggctaa |
400 |
Q |
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| T |
2572468 |
tgttgatcaatagtttgatcttgttatttgtcatgggtagttggaatggattattagccataacggatgatgaattcattagtacaaattcctcggctaa |
2572567 |
T |
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| Q |
401 |
ttacgactatgcagatgctcttggcaaagccatcatgttttt |
442 |
Q |
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| T |
2572568 |
ttacgactatgcagatgctcttggcaaagccatcttgttttt |
2572609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 442
Target Start/End: Original strand, 2561919 - 2562081
Alignment:
| Q |
283 |
ccatcatgaggtgcagtttgttgatcaatagtttgatcttgttatttgtcatgggtagttggaat---ggattattagccataacggatgatgaattcat |
379 |
Q |
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|||||||| |||||||||||||||| | | |||| ||||||| |||| |||| ||||| |||| || ||||||| |||| |||||| ||||| || |
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| T |
2561919 |
ccatcatggggtgcagtttgttgataagtggtttaatcttgtggtttgccatgagtagtaagaataatggtatattagcaataatggatgaggaattaat |
2562018 |
T |
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| Q |
380 |
tagtacaaattcctcggctaattacgactatgcagatgctcttggcaaagccatcatgttttt |
442 |
Q |
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| T |
2562019 |
tagtaaaagttcctcatcaagttacaactatgcagatgctcttggcaaagcaatcttgttttt |
2562081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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