View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_low_29 (Length: 452)
Name: NF3710_low_29
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_29 |
 | |
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| [»] scaffold0640 (1 HSPs) |
| | |
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| [»] scaffold0271 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 1042398 - 1041972
Alignment:
| Q |
8 |
gagcacagacatccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacact |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1042398 |
gagcacagacatccaggagaactgctcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacact |
1042299 |
T |
|
| Q |
108 |
ggtttgactttcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagca |
207 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1042298 |
ggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagca |
1042199 |
T |
|
| Q |
208 |
tcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1042198 |
tcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaa |
1042099 |
T |
|
| Q |
308 |
atcctgaaattcttattgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccatttca |
407 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
1042098 |
atcctgaaattcttcttgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttca |
1041999 |
T |
|
| Q |
408 |
tccccacgatgccctttaagttcttcc |
434 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
1041998 |
tccccacgacgccctttaagttcttcc |
1041972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 41193463 - 41193037
Alignment:
| Q |
8 |
gagcacagacatccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacact |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
41193463 |
gagcacagacatccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacact |
41193364 |
T |
|
| Q |
108 |
ggtttgactttcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagca |
207 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41193363 |
ggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagca |
41193264 |
T |
|
| Q |
208 |
tcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41193263 |
tcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaa |
41193164 |
T |
|
| Q |
308 |
atcctgaaattcttattgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccatttca |
407 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
41193163 |
atcctgaaattcttcttgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttca |
41193064 |
T |
|
| Q |
408 |
tccccacgatgccctttaagttcttcc |
434 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
41193063 |
tccccacgacgccctttaagttcttcc |
41193037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 41200719 - 41200293
Alignment:
| Q |
8 |
gagcacagacatccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacact |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
41200719 |
gagcacagacatccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacact |
41200620 |
T |
|
| Q |
108 |
ggtttgactttcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagca |
207 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200619 |
ggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagca |
41200520 |
T |
|
| Q |
208 |
tcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200519 |
tcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaa |
41200420 |
T |
|
| Q |
308 |
atcctgaaattcttattgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccatttca |
407 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41200419 |
atcctgaaattcttcttgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttca |
41200320 |
T |
|
| Q |
408 |
tccccacgatgccctttaagttcttcc |
434 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
41200319 |
tccccacgacgccctttaagttcttcc |
41200293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 41408571 - 41408355
Alignment:
| Q |
14 |
agacatccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttg |
113 |
Q |
| |
|
||||||||| |||| || |||||| ||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
41408571 |
agacatccacgagagttgttcccaccatatgaaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttg |
41408472 |
T |
|
| Q |
114 |
actttcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttat |
213 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
41408471 |
actttcaaacaaaatatgcccctcggattcaacagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttat |
41408372 |
T |
|
| Q |
214 |
tctattattacaacaat |
230 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
41408371 |
tgcattattacaacaat |
41408355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 33323989 - 33323563
Alignment:
| Q |
8 |
gagcacagacatccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacact |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
33323989 |
gagcacagacatccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcatcattccaacaatcaacact |
33323890 |
T |
|
| Q |
108 |
ggtttgactttcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagca |
207 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323889 |
ggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagca |
33323790 |
T |
|
| Q |
208 |
tcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323789 |
tcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaa |
33323690 |
T |
|
| Q |
308 |
atcctgaaattcttattgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccatttca |
407 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33323689 |
atcctgaaattcttcttgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttca |
33323590 |
T |
|
| Q |
408 |
tccccacgatgccctttaagttcttcc |
434 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
33323589 |
tccccacgacgccctttaagttcttcc |
33323563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 2394 - 2632
Alignment:
| Q |
12 |
acagacatccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtt |
111 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2394 |
acagacatccacgagaactgttcccaccgtatgaaatcgagacatt-gatgttgaagggttgaaatcaaacctgcagtagtccaacaatcaacagtggtt |
2492 |
T |
|
| Q |
112 |
tgactttcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatctt |
211 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
2493 |
tgactttcaaacaaaatatgccccttggattcaacagaaaatgcgcaaagctcacagtttatcggacaggaaaatacattgcaattttgaagagcatctt |
2592 |
T |
|
| Q |
212 |
attctattattacaacaatctc-gcgaacttcatatcttt |
250 |
Q |
| |
|
||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
2593 |
attgcattattacaacaatctcggtgaacttcatatcttt |
2632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 22884 - 23100
Alignment:
| Q |
14 |
agacatccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttg |
113 |
Q |
| |
|
||||||||| |||| || |||||| ||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
22884 |
agacatccacgagagttgttcccaccatatgaaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttg |
22983 |
T |
|
| Q |
114 |
actttcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttat |
213 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
22984 |
actttcaaacaaaatatgcccctcggattcaacagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttat |
23083 |
T |
|
| Q |
214 |
tctattattacaacaat |
230 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
23084 |
tgcattattacaacaat |
23100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 332
Target Start/End: Complemental strand, 38951799 - 38951714
Alignment:
| Q |
247 |
ctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttattgtgcctca |
332 |
Q |
| |
|
|||||||||| || ||||| |||||| ||||||||||| |||| | || ||| |||||||||||| |||||||| || ||||||| |
|
|
| T |
38951799 |
ctttcctgatgttcacaaaacgcttcaaccagtttttcctattagctttaccattatcgaaatcccaaaattcttcttttgcctca |
38951714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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