View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_low_30 (Length: 451)

Name: NF3710_low_30
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_low_30
NF3710_low_30
[»] chr7 (29 HSPs)
chr7 (19-415)||(48776973-48777372)
chr7 (296-418)||(44334453-44334575)
chr7 (301-443)||(43457459-43457601)
chr7 (298-403)||(44333138-44333243)
chr7 (296-443)||(7258272-7258419)
chr7 (297-443)||(35729065-35729211)
chr7 (295-410)||(35727695-35727810)
chr7 (297-441)||(48647424-48647568)
chr7 (300-409)||(30925021-30925130)
chr7 (301-409)||(48646051-48646159)
chr7 (297-409)||(48788685-48788797)
chr7 (296-443)||(10899052-10899199)
chr7 (301-443)||(7259663-7259805)
chr7 (315-409)||(8374930-8375024)
chr7 (297-407)||(45583682-45583792)
chr7 (296-406)||(8048800-8048910)
chr7 (300-406)||(46286504-46286610)
chr7 (295-415)||(42477377-42477496)
chr7 (302-410)||(8375595-8375703)
chr7 (296-410)||(39708100-39708214)
chr7 (360-410)||(13578332-13578382)
chr7 (359-409)||(44530624-44530674)
chr7 (301-384)||(34704911-34704994)
chr7 (359-443)||(45584475-45584559)
chr7 (350-415)||(44529079-44529144)
chr7 (295-371)||(24934800-24934876)
chr7 (331-415)||(34888930-34889014)
chr7 (346-407)||(33607638-33607699)
chr7 (360-409)||(43461741-43461789)
[»] chr1 (21 HSPs)
chr1 (297-410)||(32665782-32665895)
chr1 (295-409)||(10333199-10333313)
chr1 (293-415)||(7945561-7945683)
chr1 (297-409)||(5782412-5782524)
chr1 (300-415)||(6612420-6612535)
chr1 (295-443)||(9339642-9339790)
chr1 (297-443)||(52439477-52439619)
chr1 (295-409)||(9341038-9341152)
chr1 (295-409)||(52440572-52440686)
chr1 (297-441)||(10332984-10333128)
chr1 (298-410)||(7944156-7944266)
chr1 (298-418)||(34088473-34088585)
chr1 (295-401)||(44019982-44020088)
chr1 (347-410)||(6613991-6614054)
chr1 (297-407)||(3117647-3117757)
chr1 (294-409)||(22856675-22856790)
chr1 (380-415)||(22857586-22857621)
chr1 (345-408)||(25037924-25037987)
chr1 (345-408)||(25043136-25043199)
chr1 (359-410)||(50107215-50107266)
chr1 (360-409)||(5783122-5783171)
[»] chr5 (24 HSPs)
chr5 (297-443)||(4592859-4593005)
chr5 (297-408)||(8074449-8074560)
chr5 (297-410)||(28591126-28591239)
chr5 (297-409)||(2464667-2464779)
chr5 (296-415)||(546043-546161)
chr5 (293-409)||(14891160-14891272)
chr5 (297-409)||(9538062-9538174)
chr5 (294-409)||(9537018-9537132)
chr5 (297-415)||(2466781-2466899)
chr5 (296-406)||(21069286-21069396)
chr5 (292-406)||(25590424-25590537)
chr5 (296-409)||(16611725-16611838)
chr5 (297-406)||(40612675-40612784)
chr5 (326-410)||(19182977-19183061)
chr5 (309-409)||(18004648-18004748)
chr5 (324-410)||(19186232-19186318)
chr5 (295-345)||(24900409-24900459)
chr5 (297-443)||(8075812-8075958)
chr5 (336-408)||(544685-544757)
chr5 (360-404)||(13483174-13483218)
chr5 (329-415)||(32641733-32641819)
chr5 (350-404)||(4594118-4594171)
chr5 (362-408)||(14881010-14881056)
chr5 (296-369)||(13651173-13651245)
[»] chr8 (16 HSPs)
chr8 (293-443)||(35177389-35177539)
chr8 (296-443)||(32898424-32898571)
chr8 (298-443)||(10407563-10407708)
chr8 (297-415)||(35178811-35178929)
chr8 (301-443)||(1952949-1953090)
chr8 (297-407)||(41754810-41754919)
chr8 (297-384)||(41753996-41754083)
chr8 (301-409)||(5965455-5965563)
chr8 (350-404)||(41121160-41121214)
chr8 (297-406)||(30134564-30134673)
chr8 (360-409)||(45476223-45476272)
chr8 (316-409)||(31074011-31074104)
chr8 (362-410)||(10406269-10406317)
chr8 (311-409)||(24198946-24199044)
chr8 (345-418)||(28619549-28619622)
chr8 (350-402)||(1951993-1952045)
[»] chr3 (32 HSPs)
chr3 (297-410)||(2591625-2591738)
chr3 (296-415)||(55388070-55388189)
chr3 (297-443)||(52316977-52317123)
chr3 (291-415)||(17701926-17702050)
chr3 (296-416)||(2592013-2592133)
chr3 (297-415)||(36278950-36279068)
chr3 (298-415)||(48572984-48573101)
chr3 (297-418)||(34263803-34263924)
chr3 (297-415)||(17700516-17700634)
chr3 (296-415)||(47118058-47118177)
chr3 (295-410)||(48808360-48808477)
chr3 (296-442)||(52318297-52318443)
chr3 (294-410)||(55389481-55389597)
chr3 (331-410)||(11773063-11773142)
chr3 (295-409)||(19114529-19114643)
chr3 (297-411)||(45600950-45601063)
chr3 (338-415)||(36280324-36280401)
chr3 (299-443)||(20464069-20464213)
chr3 (296-410)||(33428447-33428561)
chr3 (335-409)||(53959113-53959187)
chr3 (297-394)||(53957673-53957769)
chr3 (350-415)||(48574466-48574531)
chr3 (302-410)||(50753820-50753928)
chr3 (295-406)||(3671035-3671145)
chr3 (295-409)||(47075364-47075478)
chr3 (297-410)||(19115159-19115271)
chr3 (318-418)||(8168324-8168423)
chr3 (295-374)||(19331104-19331183)
chr3 (293-371)||(26652655-26652733)
chr3 (297-409)||(49261550-49261659)
chr3 (301-409)||(40205883-40205992)
chr3 (379-415)||(48809661-48809697)
[»] chr2 (28 HSPs)
chr2 (297-443)||(17330209-17330355)
chr2 (296-415)||(32766246-32766365)
chr2 (298-418)||(24459450-24459570)
chr2 (297-409)||(31091540-31091652)
chr2 (296-415)||(32764935-32765054)
chr2 (296-408)||(2911505-2911617)
chr2 (300-415)||(31090165-31090280)
chr2 (295-409)||(24458056-24458170)
chr2 (298-443)||(7073638-7073783)
chr2 (301-443)||(2910102-2910244)
chr2 (292-408)||(39014998-39015114)
chr2 (295-409)||(39016396-39016508)
chr2 (324-443)||(17466807-17466926)
chr2 (300-441)||(40000315-40000456)
chr2 (296-402)||(5915012-5915118)
chr2 (297-408)||(21733785-21733899)
chr2 (341-415)||(14704048-14704122)
chr2 (302-408)||(34037687-34037793)
chr2 (329-415)||(33161797-33161883)
chr2 (346-415)||(5914351-5914420)
chr2 (297-354)||(14705115-14705172)
chr2 (331-410)||(7412124-7412203)
chr2 (297-410)||(31814356-31814467)
chr2 (301-415)||(34582677-34582791)
chr2 (296-409)||(8420010-8420123)
chr2 (360-409)||(38985002-38985051)
chr2 (359-415)||(17466101-17466157)
chr2 (336-384)||(43380617-43380665)
[»] scaffold0034 (1 HSPs)
scaffold0034 (298-410)||(116054-116166)
[»] chr6 (5 HSPs)
chr6 (296-409)||(30747996-30748109)
chr6 (292-406)||(31218948-31219062)
chr6 (297-410)||(23507947-23508059)
chr6 (292-409)||(31219173-31219290)
chr6 (293-392)||(6468811-6468910)
[»] chr4 (17 HSPs)
chr4 (295-410)||(47874560-47874675)
chr4 (297-443)||(42278047-42278193)
chr4 (298-415)||(47878491-47878608)
chr4 (289-409)||(53771062-53771182)
chr4 (297-413)||(26170638-26170754)
chr4 (297-405)||(31844720-31844828)
chr4 (359-413)||(26172951-26173005)
chr4 (297-406)||(54574423-54574532)
chr4 (289-409)||(53770323-53770443)
chr4 (295-409)||(4703230-4703344)
chr4 (331-410)||(4701797-4701876)
chr4 (358-409)||(19050297-19050348)
chr4 (294-384)||(19051269-19051359)
chr4 (307-377)||(42391933-42392003)
chr4 (296-409)||(39868919-39869030)
chr4 (297-415)||(48740027-48740145)
chr4 (360-443)||(50694810-50694893)
[»] scaffold0039 (3 HSPs)
scaffold0039 (294-409)||(79696-79811)
scaffold0039 (294-409)||(79068-79183)
scaffold0039 (302-377)||(74358-74433)
[»] scaffold0767 (1 HSPs)
scaffold0767 (301-409)||(5601-5709)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 48776973 - 48777372
Alignment:
Q  19 accctttcctgagcaaattagtaaaatagcttaaaatgtagggttaaatgcatatattcaagtatttatatgttatataaatatgttgtttcacagctaa 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  48776973 accctttcctgagcaaattagtaaaatagcttaatatgtagggttaaatgcatatattcaagtatttatatgttatataaatatgttgtttgacagctga 48777072  T
Q  119 t---ttattcaaatatcatttctcattttacaatgatatcaactaatttagttttgagtatctttttatttactagaaagaataatgatagattacactt 215  Q
    |   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48777073 tcaattattcaaatatcatttctcattttataatgatatcaactaatttagttttgagtatctttttatttactagaaagaataatgatagattacacct 48777172  T
Q  216 actactaccgaccccactccactgatgattagagtcaaaggtttttaaactcaacaaattcgattgagtgtatttataattgagcaaatagtcacttttg 315  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |    
T  48777173 actattaccgaccccactccactgatgattagagtcaaaggtttttaaactcaacaaactcgactgagtgtatttataattgagcaaatagtcactttag 48777272  T
Q  316 tccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgac 415  Q
    || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || |||||| ||||||||| ||||||||||||||||||||    
T  48777273 tctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcacttccgttatcactttagtccatgac 48777372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 296 - 418
Target Start/End: Complemental strand, 44334575 - 44334453
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| || ||||||||||||||||||||| ||||| ||| |||||| ||||||||||| ||||||||| |||||| ||||||||||    
T  44334575 tgagcaaatagtcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtccctgactctgcacttcca 44334476  T
Q  396 ttatcactttagtccatgacatt 418  Q
    ||||||||||||||| |||||||    
T  44334475 ttatcactttagtccctgacatt 44334453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 301 - 443
Target Start/End: Original strand, 43457459 - 43457601
Alignment:
Q  301 aaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatc 400  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| ||| |||||| | ||||||||||||||||||| | |||| ||||||||| |||||    
T  43457459 aaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccgttatc 43457558  T
Q  401 actttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    |||||||| |||||| ||       ||||||||||||||||||    
T  43457559 actttagttcatgacgttaagttattctgttaagtgatgatgt 43457601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 298 - 403
Target Start/End: Original strand, 44333138 - 44333243
Alignment:
Q  298 agcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccatt 397  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  44333138 agcaaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgtt 44333237  T
Q  398 atcact 403  Q
    ||||||    
T  44333238 atcact 44333243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 296 - 443
Target Start/End: Original strand, 7258272 - 7258419
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| |||||||| ||| || |||| ||||||||| ||| || ||| | |||||||||||||||||||||||||| ||||||||      
T  7258272 tgagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctg 7258371  T
Q  396 ttatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    ||||||||||||||| |||| ||       ||||||||||||||||||    
T  7258372 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 297 - 443
Target Start/End: Complemental strand, 35729211 - 35729065
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||| |||  ||||| | ||||| ||||||||||||| |||||| |||||||||      
T  35729211 gagcaaatagtcactttattccctgattttgcagctcgctgtcacataggtccttgacttaggattacatacaaataagtcactgactctgcacttccgc 35729112  T
Q  397 tatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    ||||||| |||||| |||||||       ||||||||||||||||||    
T  35729111 tatcactgtagtccctgacattaaataaatctgttaagtgatgatgt 35729065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 295 - 410
Target Start/End: Original strand, 35727695 - 35727810
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    ||||||||| |||||||||  ||||||| |||||| |||||||||||||| ||| |||||| | ||||||||| |||||||||||||||| ||||| |||    
T  35727695 ttgagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacatcc 35727794  T
Q  395 attatcactttagtcc 410  Q
     |||||||||||||||    
T  35727795 gttatcactttagtcc 35727810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 297 - 441
Target Start/End: Complemental strand, 48647568 - 48647424
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| | |||||||||| ||||||||| ||||||| ||| |||||| | |||||||||||||||||||||| ||| |||||||   |    
T  48647568 gagcaaatagtcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctctcactctgcacttttgt 48647469  T
Q  397 tatcactttagtccatgacattnnnnnnntctgttaagtgatgat 441  Q
    |||||||||||||| |||| ||       ||||||||||||||||    
T  48647468 tatcactttagtccctgacgttaaaaaaatctgttaagtgatgat 48647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 409
Target Start/End: Complemental strand, 30925130 - 30925021
Alignment:
Q  300 caaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattat 399  Q
    ||||||||||||||  |||||||||||||||||| | |||||||| |||  ||||| | |||||||||||||||||||||||||| ||||||||| ||||    
T  30925130 caaatagtcactttaatccctgattctgcagctcccagtcacataggtccttgactcaggattaaatacaaataagtctctgactatgcacttccgttat 30925031  T
Q  400 cactttagtc 409  Q
     |||||||||    
T  30925030 tactttagtc 30925021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 301 - 409
Target Start/End: Original strand, 48646051 - 48646159
Alignment:
Q  301 aaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatc 400  Q
    ||||||||||||| |||||||| | |||| |||||||||||||| ||| |||||| | ||||||||||||||||||| |||||| | ||||||| |||||    
T  48646051 aaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgttatc 48646150  T
Q  401 actttagtc 409  Q
    |||||||||    
T  48646151 actttagtc 48646159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 48788797 - 48788685
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    |||||||||||||||||  ||| ||| | |||| |||||||||||||| ||| |||||| || |||||||| |||||||||||||||| ||||||||| |    
T  48788797 gagcaaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccgt 48788698  T
Q  397 tatcactttagtc 409  Q
    |||||||||||||    
T  48788697 tatcactttagtc 48788685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 296 - 443
Target Start/End: Complemental strand, 10899199 - 10899052
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||| |||| || ||||| |||||||| |||||| ||||||||||||||  ||  ||||  | |||||||||||||||||||||||||| |||||||||     
T  10899199 tgagtaaattgttactttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcacttccg 10899100  T
Q  396 ttatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    ||||||||||||||| |||| ||       ||||||||||||||||||    
T  10899099 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 10899052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 443
Target Start/End: Complemental strand, 7259805 - 7259663
Alignment:
Q  301 aaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatc 400  Q
    |||||||||||||  || |||||| || |||||||||||||||  |||||||| | | ||||||||||||||||||| |||||| | ||||||| |||||    
T  7259805 aaatagtcactttaatcgctgattttgtagctcgctgtcacatgggtctctgattcaggattaaatacaaataagtccctgactctacacttccgttatc 7259706  T
Q  401 actttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    |||||||||| |||| ||       ||||||||||||||||||    
T  7259705 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7259663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 409
Target Start/End: Original strand, 8374930 - 8375024
Alignment:
Q  315 gtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtc 409  Q
    |||||||| |||||| |||||||||||||| |||||||||| |  |||||||||||| |||| ||||| ||||||||||| ||||||||||||||    
T  8374930 gtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctgattttgcacttccgttatcactttagtc 8375024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 407
Target Start/End: Original strand, 45583682 - 45583792
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||| ||| |||||| |  |||||||||| ||||||  |||| | ||||||||| |    
T  45583682 gagcaaatagtcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatacagataagttcctgattctgcacttccgt 45583781  T
Q  397 tatcactttag 407  Q
    |||||||||||    
T  45583782 tatcactttag 45583792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 406
Target Start/End: Complemental strand, 8048910 - 8048800
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    ||||||||||||||||||   | |||| |||||| ||||||| |||| | |||||||||| | ||||||||||||| ||||||| |||| |||||||||     
T  8048910 tgagcaaatagtcactttaccctctgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctccgactctgcacttccg 8048811  T
Q  396 ttatcacttta 406  Q
    |||||||||||    
T  8048810 ttatcacttta 8048800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 46286504 - 46286610
Alignment:
Q  300 caaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattat 399  Q
    |||||||||||||| |||||||| ||| || |||||||| | | | ||| |||||| | |||||||||||||||||||||||||| ||||||||  ||||    
T  46286504 caaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctgactctgcacttctgttat 46286603  T
Q  400 cacttta 406  Q
    |||||||    
T  46286604 cacttta 46286610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 415
Target Start/End: Original strand, 42477377 - 42477496
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    ||||||||||| ||| ||| |||| ||| |||||| |||| |||| |||| |||||||||| | ||||||||||||||||||| |||||| |||||||||    
T  42477377 ttgagcaaataatcaatttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagtc-ctgactctgcacttcc 42477475  T
Q  395 attatcactttagtccatgac 415  Q
     |||||| |||| ||| ||||    
T  42477476 gttatcattttaatccctgac 42477496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 410
Target Start/End: Complemental strand, 8375703 - 8375595
Alignment:
Q  302 aatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatca 401  Q
    ||||||||| || |||||||| |  ||| | | |||||||||| ||| |||||| ||||||||||||||| |||| ||||||| ||||||||| ||||||    
T  8375703 aatagtcacattagtccctgacttcgcaccgcactgtcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccgttatca 8375604  T
Q  402 ctttagtcc 410  Q
     ||||||||    
T  8375603 atttagtcc 8375595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 410
Target Start/End: Original strand, 39708100 - 39708214
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||| ||||||||||| ||| |||| |||| | ||||| |||||| | |||  ||||| | |||| |||||||| ||||| | ||||||||||||||     
T  39708100 tgagcatatagtcactttagtctctgactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtcaccgactttgcacttccg 39708199  T
Q  396 ttatcactttagtcc 410  Q
    |||||||||||||||    
T  39708200 ttatcactttagtcc 39708214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 13578382 - 13578332
Alignment:
Q  360 attaaatacaaataagtctctgactttgcacttccattatcactttagtcc 410  Q
    |||||||||||||||||| |||||| ||||||||| |||||||||||||||    
T  13578382 attaaatacaaataagtcactgactctgcacttccgttatcactttagtcc 13578332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 44530674 - 44530624
Alignment:
Q  359 gattaaatacaaataagtctctgactttgcacttccattatcactttagtc 409  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  44530674 gattaaatataaataagtctctgactctgcacttccgttatcactttagtc 44530624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 34704911 - 34704994
Alignment:
Q  301 aaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgact 384  Q
    ||||||||||||| ||| | || |||||| |||| ||||||| | | |||||||| | ||||||||||||| ||||||||||||    
T  34704911 aaatagtcactttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggattaaatacaaagaagtctctgact 34704994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 443
Target Start/End: Complemental strand, 45584559 - 45584475
Alignment:
Q  359 gattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    ||||||||||||||||| |  ||||| ||||||||| ||||||||||||||| |||| ||       ||||||||||||||||||    
T  45584559 gattaaatacaaataagccaatgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 45584475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 415
Target Start/End: Original strand, 44529079 - 44529144
Alignment:
Q  350 ctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgac 415  Q
    |||||| ||||||||||||||||||||||| ||||   ||||||  ||||||||||||||| ||||    
T  44529079 ctgactcatgattaaatacaaataagtctccgactcaacacttctgttatcactttagtccctgac 44529144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 24934800 - 24934876
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaa 371  Q
    ||||| |||| |||||||| |||||| | ||||||  ||||||||||| | |||||||||| | |||||||||||||    
T  24934800 ttgagtaaatggtcactttggtccctaactctgcatatcgctgtcacaaaggtctctgacttaggattaaatacaaa 24934876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 415
Target Start/End: Complemental strand, 34889014 - 34888930
Alignment:
Q  331 ctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgac 415  Q
    |||||||||||| | |||||| ||| ||||||||||| ||| | |||  | ||| ||||||||| ||||||||||||||| ||||    
T  34889014 ctcgctgtcacaaaggtctctcactcatgattaaatataaagatgtccttaactctgcacttccgttatcactttagtccttgac 34888930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 33607699 - 33607638
Alignment:
Q  346 gtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttag 407  Q
    |||||||| | | ||||||||||||| |||||||||| | ||||||||| |||||| |||||    
T  33607699 gtctctgattcaggattaaatacaaagaagtctctgattctgcacttccgttatcattttag 33607638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 409
Target Start/End: Complemental strand, 43461789 - 43461741
Alignment:
Q  360 attaaatacaaataagtctctgactttgcacttccattatcactttagtc 409  Q
    ||||||||||||||||| | ||||| ||||||||| ||||||||||||||    
T  43461789 attaaatacaaataagttt-tgactatgcacttccgttatcactttagtc 43461741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 297 - 410
Target Start/End: Complemental strand, 32665895 - 32665782
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||||||| |    
T  32665895 gagcaaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttccgt 32665796  T
Q  397 tatcactttagtcc 410  Q
    ||||||||||||||    
T  32665795 tatcactttagtcc 32665782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 295 - 409
Target Start/End: Complemental strand, 10333313 - 10333199
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    ||||||||||||||||| |  || |||||||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||||||| |||||||||    
T  10333313 ttgagcaaatagtcactataatctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctgactctgcacttcc 10333214  T
Q  395 attatcactttagtc 409  Q
     ||||||||||||||    
T  10333213 gttatcactttagtc 10333199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 293 - 415
Target Start/End: Complemental strand, 7945683 - 7945561
Alignment:
Q  293 aattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcactt 392  Q
    ||||||||||||| ||| ||| |||||||| |||||| |||||||||||||| ||  |||||| | |||||||||||||||||||||||||| |||||||    
T  7945683 aattgagcaaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcactt 7945584  T
Q  393 ccattatcactttagtccatgac 415  Q
    || ||||||||||||||| ||||    
T  7945583 ccgttatcactttagtccctgac 7945561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 297 - 409
Target Start/End: Original strand, 5782412 - 5782524
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    |||||||| |||| ||| |||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||||| | ||||||||| |    
T  5782412 gagcaaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttccct 5782511  T
Q  397 tatcactttagtc 409  Q
    |||||||||||||    
T  5782512 tatcactttagtc 5782524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 6612420 - 6612535
Alignment:
Q  300 caaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattat 399  Q
    |||||||||||||| |||||||| |||||| |||||||| | | | |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  6612420 caaatagtcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgcacttccattat 6612519  T
Q  400 cactttagtccatgac 415  Q
    ||||||| ||| ||||    
T  6612520 cactttaatccctgac 6612535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 443
Target Start/End: Original strand, 9339642 - 9339790
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    |||||||||||||| |||| |||||||||||||||||||| ||| ||||| ||| |||||| | |||||||||||||||| || | |||| |||||||||    
T  9339642 ttgagcaaatagtccctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataaatccccgactctgcacttcc 9339741  T
Q  395 attatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
     ||||||||||||||| |||| ||       ||||||||||||||||||    
T  9339742 gttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 9339790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 297 - 443
Target Start/End: Original strand, 52439477 - 52439619
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| || | ||||||||||| ||||||||||     |||| |||| |    
T  52439477 gagcaaatagtcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatacagataagtctctc----tgcatttccgt 52439572  T
Q  397 tatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    |||||||||||||| |||| ||       ||||||||||||||||||    
T  52439573 tatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 52439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 295 - 409
Target Start/End: Complemental strand, 9341152 - 9341038
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    |||||||||||||||||||  ||  | |||||||| ||| || ||||||| ||| |||||| | |||||||||||||||||||||||||||||||||||     
T  9341152 ttgagcaaatagtcactttgatcatttattctgcatctcactatcacataggtccctgactcaggattaaatacaaataagtctctgactttgcacttct 9341053  T
Q  395 attatcactttagtc 409  Q
     ||||||||||||||    
T  9341052 gttatcactttagtc 9341038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 409
Target Start/End: Complemental strand, 52440686 - 52440572
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    ||||||||||| |||| || ||| |||| | ||||  ||||||||||||| ||| |||| | | ||||||||| |||||||||||||||| |||||||||    
T  52440686 ttgagcaaataatcacattggtctctgactttgcacatcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcacttcc 52440587  T
Q  395 attatcactttagtc 409  Q
    |||||||||||||||    
T  52440586 attatcactttagtc 52440572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 441
Target Start/End: Original strand, 10332984 - 10333128
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||||||| | |||| |||| ||||||||| |||  ||| | | ||||||||| ||||||||| || ||| ||||||||| |    
T  10332984 gagcaaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcacttccgt 10333083  T
Q  397 tatcactttagtccatgacattnnnnnnntctgttaagtgatgat 441  Q
    ||||| |||||||| |||| ||       ||||||||||||||||    
T  10333084 tatcattttagtccttgacgttaaaaaaatctgttaagtgatgat 10333128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 410
Target Start/End: Original strand, 7944156 - 7944266
Alignment:
Q  298 agcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccatt 397  Q
    ||||||||||||||   |||||||||| |||| |||||||||||||| ||| |||||| |  ||||||||||||||||||  ||||| ||||||| | ||    
T  7944156 agcaaatagtcacta--gtccctgattttgcaactcgctgtcacataggtccctgactcaaaattaaatacaaataagtccttgactctgcactttcgtt 7944253  T
Q  398 atcactttagtcc 410  Q
    |||| ||||||||    
T  7944254 atcaatttagtcc 7944266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 298 - 418
Target Start/End: Complemental strand, 34088585 - 34088473
Alignment:
Q  298 agcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccatt 397  Q
    ||||||| |||||||| |||||||| ||| || |||||||||||| | |||        ||||||||||||||| |||||||||||| |||||||||| |    
T  34088585 agcaaattgtcactttagtccctgactctacatctcgctgtcacaaaggtc--------atgattaaatacaaagaagtctctgactctgcacttccact 34088494  T
Q  398 atcactttagtccatgacatt 418  Q
    ||||||||| ||| |||||||    
T  34088493 atcactttaatccttgacatt 34088473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 401
Target Start/End: Original strand, 44019982 - 44020088
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    ||||||||||  | ||||| |||||||| | |||| |||| ||||||| |||||||||||| | ||||||||| ||| |||||||||||| ||||||| |    
T  44019982 ttgagcaaatgattactttggtccctgactttgcaactcgttgtcacaaaagtctctgactcaagattaaatataaagaagtctctgactctgcacttac 44020081  T
Q  395 attatca 401  Q
     ||||||    
T  44020082 gttatca 44020088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 6614054 - 6613991
Alignment:
Q  347 tctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtcc 410  Q
    ||||||||| | |||||||||||||||||||||||||| ||||||||  |||||| ||||||||    
T  6614054 tctctgactcaggattaaatacaaataagtctctgactctgcacttcagttatcattttagtcc 6613991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 407
Target Start/End: Original strand, 3117647 - 3117757
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||| ||| |||||| | ||| ||  ||| | ||||| | |||||||||| | ||||||||||||| || ||||||||| | ||||||| |    
T  3117647 gagcaaatagtcattttagtccctaactcttcacatcgttatcacaaaggtctctgactcaagattaaatacaaagaaatctctgactctccacttccgt 3117746  T
Q  397 tatcactttag 407  Q
    |||||||||||    
T  3117747 tatcactttag 3117757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 409
Target Start/End: Original strand, 22856675 - 22856790
Alignment:
Q  294 attgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacata-agtctctgactaatgattaaatacaaataagtctctgactttgcactt 392  Q
    ||||||||||| |||||||| ||| |||| |||||| | || ||| ||| | | ||| ||||| | ||||||||||||| |||||||| ||| |||||||    
T  22856675 attgagcaaatggtcactttagtcactgactctgcaccacgttgttacaaagattct-tgactcaggattaaatacaaagaagtctctaactctgcactt 22856773  T
Q  393 ccattatcactttagtc 409  Q
    || ||||||||||||||    
T  22856774 ccgttatcactttagtc 22856790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 415
Target Start/End: Complemental strand, 22857621 - 22857586
Alignment:
Q  380 tgactttgcacttccattatcactttagtccatgac 415  Q
    ||||||||||||||| ||||||||||||||||||||    
T  22857621 tgactttgcacttccgttatcactttagtccatgac 22857586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 25037924 - 25037987
Alignment:
Q  345 agtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagt 408  Q
    |||| |||||| ||||||||||||||| ||||| |||||| || |||| | |||||||||||||    
T  25037924 agtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttagt 25037987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 25043136 - 25043199
Alignment:
Q  345 agtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagt 408  Q
    |||| |||||| ||||||||||||||| ||||| |||||| || |||| | |||||||||||||    
T  25043136 agtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttagt 25043199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 50107266 - 50107215
Alignment:
Q  359 gattaaatacaaataagtctctgactttgcacttccattatcactttagtcc 410  Q
    |||||||||||||  ||||||||| | ||||||||| |||||||||||||||    
T  50107266 gattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagtcc 50107215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 409
Target Start/End: Complemental strand, 5783171 - 5783122
Alignment:
Q  360 attaaatacaaataagtctctgactttgcacttccattatcactttagtc 409  Q
    |||||||||||| |||||  ||||| ||||||||| ||||||||||||||    
T  5783171 attaaatacaaagaagtccatgactctgcacttccgttatcactttagtc 5783122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 297 - 443
Target Start/End: Original strand, 4592859 - 4593005
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||||||||| || |||||||||||||||||||| |||||| | ||||||||||||||||||| |||||| ||||||||| |    
T  4592859 gagcaaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgt 4592958  T
Q  397 tatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    |||||||||||||| |||| ||       ||||||||||||||||||    
T  4592959 tatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 4593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 297 - 408
Target Start/End: Original strand, 8074449 - 8074560
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||||| |||||| ||||||||| |    
T  8074449 gagcaaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgt 8074548  T
Q  397 tatcactttagt 408  Q
    ||||||||||||    
T  8074549 tatcactttagt 8074560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 297 - 410
Target Start/End: Complemental strand, 28591239 - 28591126
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    |||||||||||||||||  ||||||| |||||| |||||||||||||| ||| |||||| | |||||||||||||||| || |||||| ||||||||| |    
T  28591239 gagcaaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcctt 28591140  T
Q  397 tatcactttagtcc 410  Q
    ||||||||||||||    
T  28591139 tatcactttagtcc 28591126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 297 - 409
Target Start/End: Original strand, 2464667 - 2464779
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| ||| |||||||||||||||||||||| ||| |||  ||||| ||||||||||||||||||||| || ||| ||||||| | |    
T  2464667 gagcaaatagtcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtccctaactctgcacttacgt 2464766  T
Q  397 tatcactttagtc 409  Q
    |||||||||||||    
T  2464767 tatcactttagtc 2464779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 296 - 415
Target Start/End: Complemental strand, 546161 - 546043
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||||||| ||| |||||| | ||||||||||| |||||||  ||||| |||||||||     
T  546161 tgagcaaatagtcactttagtccc-gattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcacttccg 546063  T
Q  396 ttatcactttagtccatgac 415  Q
    ||||||||||||||| ||||    
T  546062 ttatcactttagtccctgac 546043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 409
Target Start/End: Complemental strand, 14891272 - 14891160
Alignment:
Q  293 aattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcactt 392  Q
    ||||||||||||||||||||| |||||| | |||||| |||||||||||||| |||||||||| |||||||||| |    |||||||||||| | |||||    
T  14891272 aattgagcaaatagtcactttggtccctcactctgcacctcgctgtcacataggtctctgactcatgattaaatgc----aagtctctgactctacactt 14891177  T
Q  393 ccattatcactttagtc 409  Q
    || ||||||||||||||    
T  14891176 ccgttatcactttagtc 14891160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 9538174 - 9538062
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||||||| |||||| |||| ||||| ||| ||| |||||| | ||||||||||||| |||||||||| | ||||||||| |    
T  9538174 gagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcacttccgt 9538075  T
Q  397 tatcactttagtc 409  Q
    ||||| |||||||    
T  9538074 tatcattttagtc 9538062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 409
Target Start/End: Original strand, 9537018 - 9537132
Alignment:
Q  294 attgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttc 393  Q
    ||||| ||||| || ||||| |||||| | |||||| |||||||||||||| |||||||||| |  |||||||||||| |||||  ||||| ||||||||    
T  9537018 attgaacaaatggtgactttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtc-atgactgtgcacttc 9537116  T
Q  394 cattatcactttagtc 409  Q
    ||||||||||||||||    
T  9537117 cattatcactttagtc 9537132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 415
Target Start/End: Complemental strand, 2466899 - 2466781
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| ||| |||| |||||| |||||| ||||||| |||  ||| | | ||||||||| ||||||||| || ||| ||||||||| |    
T  2466899 gagcaaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccgt 2466800  T
Q  397 tatcactttagtccatgac 415  Q
    |||||||||||||| ||||    
T  2466799 tatcactttagtccctgac 2466781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 406
Target Start/End: Original strand, 21069286 - 21069396
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| ||| |||| |||||| |||| ||||||| | |||||||||| | |||||||||||||||||||  ||||| ||||||||      
T  21069286 tgagcaaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtccttgactctgcacttctg 21069385  T
Q  396 ttatcacttta 406  Q
    || ||||||||    
T  21069386 ttttcacttta 21069396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 292 - 406
Target Start/End: Original strand, 25590424 - 25590537
Alignment:
Q  292 taattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcact 391  Q
    ||||||||||||||||||||||  |  |||| |||||| |||||||||||||| ||| ||||||   |||||||||||||||||||||||| | ||||||    
T  25590424 taattgagcaaatagtcactttgttttctgactctgcacctcgctgtcacataggtccctgact-cggattaaatacaaataagtctctgattctgcact 25590522  T
Q  392 tccattatcacttta 406  Q
    ||  |||||||||||    
T  25590523 tctgttatcacttta 25590537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 409
Target Start/End: Original strand, 16611725 - 16611838
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    ||||||||| ||||||||  | | ||| ||| || |||||||||||||| |||||||||| | ||||||||||||| ||| |||||| | |||||||||     
T  16611725 tgagcaaatggtcactttaattcttgactctacacctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccg 16611824  T
Q  396 ttatcactttagtc 409  Q
    ||||||||||||||    
T  16611825 ttatcactttagtc 16611838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 406
Target Start/End: Complemental strand, 40612784 - 40612675
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||| || ||| |||||| | ||||||||||| |||  |  |||||| ||||||||| |    
T  40612784 gagcaaatagtcactttagtccctgattttgcagctcactgtcacgtaggtccctgactcaggattaaatacagatattttcctgactctgcacttccgt 40612685  T
Q  397 tatcacttta 406  Q
    ||||||||||    
T  40612684 tatcacttta 40612675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 326 - 410
Target Start/End: Original strand, 19182977 - 19183061
Alignment:
Q  326 tgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtcc 410  Q
    |||| |||||||||||||| |||||||||| | ||||||||||||||||||  |||||| | ||||||| |||||||||||||||    
T  19182977 tgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatcactttagtcc 19183061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 18004648 - 18004748
Alignment:
Q  309 acttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagt 408  Q
    ||||| |||||||| |||||| ||| |||||||| |||||| |  || | ||||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  18004648 actttagtccctgactctgcacctcactgtcacaaaagtctatagcttaggattaaatacaaagaggtctatgactctgcacttccgttatcactttagt 18004747  T
Q  409 c 409  Q
    |    
T  18004748 c 18004748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 410
Target Start/End: Complemental strand, 19186318 - 19186232
Alignment:
Q  324 tctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtcc 410  Q
    |||||| ||| | |||||||| ||| |||||| | ||||||||||||| |||||||||||| | || |||| |||||||||||||||    
T  19186318 tctgcatctcccagtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacatttccgttatcactttagtcc 19186232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 24900459 - 24900409
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataa 345  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||||||||    
T  24900459 ttgagcaaatagtcactttggtccctgactctgcacctcgctgtcacataa 24900409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 443
Target Start/End: Complemental strand, 8075958 - 8075812
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    |||||||||||| |||| |||  ||| |||||| |||||||| | |||  || |||| | | ||||||||||||| |||| ||||| | ||||||| | |    
T  8075958 gagcaaatagtcgctttggtcattgactctgcacctcgctgttagatagatccctgattcaagattaaatacaaaaaagtatctgattctgcactttcgt 8075859  T
Q  397 tatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    |||||||||||||| |||| ||       ||||||||||||||||||    
T  8075858 tatcactttagtccctgacgtttaaaaaatctgttaagtgatgatgt 8075812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 544685 - 544757
Alignment:
Q  336 tgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagt 408  Q
    ||||| ||| |||||||||| | ||||||||||||||||||| |||||| ||||||||| |||| | ||||||    
T  544685 tgtcagataggtctctgactcaggattaaatacaaataagtcactgactctgcacttccgttataaatttagt 544757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 13483218 - 13483174
Alignment:
Q  360 attaaatacaaataagtctctgactttgcacttccattatcactt 404  Q
    |||||||||||| |||||||||||||||||||||| |||||||||    
T  13483218 attaaatacaaacaagtctctgactttgcacttccgttatcactt 13483174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 415
Target Start/End: Complemental strand, 32641819 - 32641733
Alignment:
Q  329 agctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgac 415  Q
    |||||| |||||| || ||| || ||| | ||||||||||||||||||  |||||| ||||||||| ||||||||||| ||| ||||    
T  32641819 agctcgttgtcacgtaggtcccttactcaagattaaatacaaataagttgctgactctgcacttccgttatcactttaatccctgac 32641733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 4594171 - 4594118
Alignment:
Q  350 ctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactt 404  Q
    |||||| | |||||||||||||||||||  ||||| |||||||||||||||||||    
T  4594171 ctgactcaggattaaatacaaataagtca-tgactctgcacttccattatcactt 4594118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 14881010 - 14881056
Alignment:
Q  362 taaatacaaataagtctctgactttgcacttccattatcactttagt 408  Q
    |||| ||||||||||| |||||| ||||||||| |||||||||||||    
T  14881010 taaacacaaataagtccctgactctgcacttccgttatcactttagt 14881056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 13651245 - 13651173
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaataca 369  Q
    |||||||||||||||||| |||| ||| | |||| || ||||||||||| ||| |||||| | |||||||||||    
T  13651245 tgagcaaatagtcactttagtccttgactgtgcacct-gctgtcacataggtccctgactcaggattaaataca 13651173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 293 - 443
Target Start/End: Original strand, 35177389 - 35177539
Alignment:
Q  293 aattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcactt 392  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||| ||||||   ||||||||||||||||||| |||||| |||||||    
T  35177389 aattgagcaaatagtcaatttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcactt 35177488  T
Q  393 ccattatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    || ||||||||||||||| |||| ||       ||||||||||||||||||    
T  35177489 ccgttatcactttagtccctgacgttaaaataatctgttaagtgatgatgt 35177539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 443
Target Start/End: Complemental strand, 32898571 - 32898424
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| |||||||| |||||| ||| |||||||||| ||| |||||| | ||||||||||||||||||| |||||| |||||||||     
T  32898571 tgagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccg 32898472  T
Q  396 ttatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    ||||||||||||||| |||| ||       ||||||||||||||||||    
T  32898471 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 32898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 298 - 443
Target Start/End: Complemental strand, 10407708 - 10407563
Alignment:
Q  298 agcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccatt 397  Q
    |||||||||||||||| ||| ||||||||||||||| |||||||||| |||  ||||| | ||||||| |||||||||||  | ||||||||||||| ||    
T  10407708 agcaaatagtcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtccataactttgcacttccgtt 10407609  T
Q  398 atcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    ||||||||||| | |||| ||       ||||||||||||||||||    
T  10407608 atcactttagttcctgacgttaaaaaaatctgttaagtgatgatgt 10407563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 297 - 415
Target Start/End: Complemental strand, 35178929 - 35178811
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||||||| ||||||  ||||||||| ||  ||| |||||| | ||||||||||||||||||| |||| | ||||||||| |    
T  35178929 gagcaaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcacttccgt 35178830  T
Q  397 tatcactttagtccatgac 415  Q
    |||||||||||||| ||||    
T  35178829 tatcactttagtccctgac 35178811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 443
Target Start/End: Complemental strand, 1953090 - 1952949
Alignment:
Q  301 aaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatc 400  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||  ||||||||| | ||||| |||||||||||||| ||||| || |||||| |||||    
T  1953090 aaatagtcactttagtccctgattctgcagctcgttgtcatatagatctctgact-aggattacatacaaataagtctatgactctgtacttccgttatc 1952992  T
Q  401 actttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    |||||||||  |||| ||       ||||||||||||||||||    
T  1952991 actttagtctctgacgttaaataaatctgttaagtgatgatgt 1952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 407
Target Start/End: Complemental strand, 41754919 - 41754810
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    |||||||||||||||||  ||| |||||||||| ||||||||||||||  ||||||||| | ||||||||||||| ||||  |||||| | ||||||| |    
T  41754919 gagcaaatagtcactttaatcc-tgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagttcctgactctacacttccgt 41754821  T
Q  397 tatcactttag 407  Q
    ||| |||||||    
T  41754820 tattactttag 41754810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 41753996 - 41754083
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgact 384  Q
    ||||||||||||||||| ||||||| ||||||| || ||||||||||| ||| |||||| | ||||||||| ||| ||||| ||||||    
T  41753996 gagcaaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtccctgact 41754083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 409
Target Start/End: Complemental strand, 5965563 - 5965455
Alignment:
Q  301 aaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatc 400  Q
    ||||||||| ||  ||| |||||| | || |||| ||||||| | ||| |||||| | ||||||||||||| |||||| ||||| ||||||||| |||||    
T  5965563 aaatagtcatttcagtctctgattttacacctcgttgtcacaaatgtccctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatc 5965464  T
Q  401 actttagtc 409  Q
    |||||||||    
T  5965463 actttagtc 5965455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 404
Target Start/End: Original strand, 41121160 - 41121214
Alignment:
Q  350 ctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactt 404  Q
    |||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  41121160 ctgactcatgattaaatacaaagaagtctctgactatgcacttctattatcactt 41121214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 406
Target Start/End: Original strand, 30134564 - 30134673
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||| ||||||| |||| | | |||||| |||||||||||| | ||| |  ||| ||||||||||||||| |||| | ||||| ||||||||  |    
T  30134564 gagcaaataatcactttagtccttaactctgcacctcgctgtcacaaaggtcccctactcatgattaaatacaaagaagtgtgtgactctgcacttctgt 30134663  T
Q  397 tatcacttta 406  Q
    ||||||||||    
T  30134664 tatcacttta 30134673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 409
Target Start/End: Original strand, 45476223 - 45476272
Alignment:
Q  360 attaaatacaaataagtctctgactttgcacttccattatcactttagtc 409  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  45476223 attaaatacaaataagtctctgactctgcacttctgttatcactttagtc 45476272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 31074011 - 31074104
Alignment:
Q  316 tccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtc 409  Q
    ||||||| |||||| || ||||||||| ||||||||||||   |||||||| ||||  ||| ||||| | ||||||||  ||||||||||||||    
T  31074011 tccctgactctgcatcttgctgtcacaaaagtctctgactctggattaaatgcaaagtagtttctgaatgtgcacttctgttatcactttagtc 31074104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 410
Target Start/End: Original strand, 10406269 - 10406317
Alignment:
Q  362 taaatacaaataagtctctgactttgcacttccattatcactttagtcc 410  Q
    |||||| ||| |||||||||||| |||||||| ||||||||||||||||    
T  10406269 taaataaaaacaagtctctgactctgcacttctattatcactttagtcc 10406317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 409
Target Start/End: Original strand, 24198946 - 24199044
Alignment:
Q  311 ttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtc 409  Q
    ||||||| |||||||| || |||||||||||| | |||| ||| | | |||||||||||||  | ||  ||| | ||||||||| ||||||||||||||    
T  24198946 ttttgtctctgattctacatctcgctgtcacaaaggtctttgattcaggattaaatacaaagtaatcattgaatgtgcacttccgttatcactttagtc 24199044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 418
Target Start/End: Complemental strand, 28619622 - 28619549
Alignment:
Q  345 agtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgacatt 418  Q
    |||| |||||| | ||||||||||||| | |||  ||||| |||||||| |||||||||||||||  |||||||    
T  28619622 agtccctgactcaggattaaatacaaagaggtcattgactctgcacttctattatcactttagtctctgacatt 28619549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 1951993 - 1952045
Alignment:
Q  350 ctgactaatgattaaatacaaataagtctctgactttgcacttccattatcac 402  Q
    |||||| | |||||||||||||||||| ||||||| |||| || |||||||||    
T  1951993 ctgactcaggattaaatacaaataagtttctgactctgcattttcattatcac 1952045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 297 - 410
Target Start/End: Original strand, 2591625 - 2591738
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| ||| |||||| | ||||||||||||| |||||||||||| |||||||||||    
T  2591625 gagcaaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcacttccat 2591724  T
Q  397 tatcactttagtcc 410  Q
     |||||||||||||    
T  2591725 gatcactttagtcc 2591738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 296 - 415
Target Start/End: Original strand, 55388070 - 55388189
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||  |||||| |||||| ||     
T  55388070 tgagcaaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagttactgactctgcactcccg 55388169  T
Q  396 ttatcactttagtccatgac 415  Q
    ||||||||||||||| ||||    
T  55388170 ttatcactttagtccctgac 55388189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 297 - 443
Target Start/End: Original strand, 52316977 - 52317123
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| | ||| ||||| ||| |    
T  52316977 gagcaaataatcactttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtctttaactctgcacctccgt 52317076  T
Q  397 tatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    ||||| ||||||||||||| ||       ||||||||||||||||||    
T  52317077 tatcattttagtccatgacgttaaaaaaatctgttaagtgatgatgt 52317123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 291 - 415
Target Start/End: Complemental strand, 17702050 - 17701926
Alignment:
Q  291 ataattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcac 390  Q
    |||| |||| ||||||||||||| ||| |||||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||||| |||||| |||||    
T  17702050 ataaatgagtaaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcac 17701951  T
Q  391 ttccattatcactttagtccatgac 415  Q
    |||| ||||||||||||||| ||||    
T  17701950 ttccgttatcactttagtccctgac 17701926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 296 - 416
Target Start/End: Complemental strand, 2592133 - 2592013
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||| ||||||    ||||||     
T  2592133 tgagcaaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactcaatacttccg 2592034  T
Q  396 ttatcactttagtccatgaca 416  Q
    ||||||||||||||| |||||    
T  2592033 ttatcactttagtccctgaca 2592013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 36278950 - 36279068
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||||||||| | ||||||| ||||||||| ||| |||| | | |||||||||||||||||||||||||| ||||||||| |    
T  36278950 gagcaaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgt 36279049  T
Q  397 tatcactttagtccatgac 415  Q
    ||||| |||||||| ||||    
T  36279050 tatcattttagtccctgac 36279068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 298 - 415
Target Start/End: Original strand, 48572984 - 48573101
Alignment:
Q  298 agcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccatt 397  Q
    |||||||||||||||| |||||||| |||||| |||| | ||||||| ||| |||||| | ||||||||||||||||| |||||||| ||||||||| ||    
T  48572984 agcaaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgtt 48573083  T
Q  398 atcactttagtccatgac 415  Q
    ||||||||||||| ||||    
T  48573084 atcactttagtccttgac 48573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 297 - 418
Target Start/End: Original strand, 34263803 - 34263924
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| | |||||| |||||| |||||||||||| | |||  ||| | | |||||||||||||||||||||||||| | |||||||||    
T  34263803 gagcaaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactctacacttccat 34263902  T
Q  397 tatcactttagtccatgacatt 418  Q
    |||||||||| ||| |||||||    
T  34263903 tatcactttaatccctgacatt 34263924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 17700516 - 17700634
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||  ||| |||||| |||| ||||||||| ||  |||||| | ||||||||||||||||||| |||||| ||||||||| |    
T  17700516 gagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccgt 17700615  T
Q  397 tatcactttagtccatgac 415  Q
    |||||||||||||| ||||    
T  17700616 tatcactttagtccctgac 17700634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 296 - 415
Target Start/End: Complemental strand, 47118177 - 47118058
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    ||||||||| |||||||| |||||||| |||||| |||| ||||| ||||||| | |||| | |||||||| |||| |||||||||||| ||||||| |     
T  47118177 tgagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcactttcg 47118078  T
Q  396 ttatcactttagtccatgac 415  Q
    ||||||||||||||| ||||    
T  47118077 ttatcactttagtccctgac 47118058  T

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Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 410
Target Start/End: Original strand, 48808360 - 48808477
Alignment:
Q  295 ttgagcaaatagtcactttt--gtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcactt 392  Q
    ||||||||||| |||||||   |||||||||||||||||||||||| | ||| |||||||||| | ||||||||||||||||||  || ||| |||||||    
T  48808360 ttgagcaaataatcactttatagtccctgattctgcagctcgctgttagataggtctctgactcaggattaaatacaaataagttcctaactctgcactt 48808459  T
Q  393 ccattatcactttagtcc 410  Q
    || || ||||||||||||    
T  48808460 ccgttgtcactttagtcc 48808477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 296 - 442
Target Start/End: Complemental strand, 52318443 - 52318297
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| ||| |||| ||||||  |||||||||||||  || |||||| | ||||||||||||||||||| |||||| ||||||||      
T  52318443 tgagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctg 52318344  T
Q  396 ttatcactttagtccatgacattnnnnnnntctgttaagtgatgatg 442  Q
     ||| |||||||||| |||| ||       |||||||||||||||||    
T  52318343 atattactttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 55389597 - 55389481
Alignment:
Q  294 attgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttc 393  Q
    |||| ||||||||||||||| |||||| | |||||| |||||||||||||| |||  ||||| |  ||||||||||| |||||| |||||| | ||||||    
T  55389597 attgcgcaaatagtcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtccctgactctacacttc 55389498  T
Q  394 cattatcactttagtcc 410  Q
    | |||||||||||||||    
T  55389497 cgttatcactttagtcc 55389481  T

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Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 410
Target Start/End: Complemental strand, 11773142 - 11773063
Alignment:
Q  331 ctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtcc 410  Q
    |||||||||||||| ||| |||||| | |||||||||||||||||||||||||| | ||||||| |||||||||||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcactttagtcc 11773063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 295 - 409
Target Start/End: Original strand, 19114529 - 19114643
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    ||||||||||  ||||||| |||||||| ||||||  ||| ||||||| | ||| |||||| | ||||||||||||| ||||| || |||||||||||||    
T  19114529 ttgagcaaatgatcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttcc 19114628  T
Q  395 attatcactttagtc 409  Q
     ||||||||||||||    
T  19114629 gttatcactttagtc 19114643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 411
Target Start/End: Complemental strand, 45601063 - 45600950
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    |||||||| |||||||| |||||||| ||||   |||||||||||||| ||| |||| | | ||||||||||||| ||||| |||||| ||||||||| |    
T  45601063 gagcaaatcgtcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagtc-ctgactctgcacttccgt 45600965  T
Q  397 tatcactttagtcca 411  Q
    |||||||||||||||    
T  45600964 tatcactttagtcca 45600950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 415
Target Start/End: Complemental strand, 36280401 - 36280324
Alignment:
Q  338 tcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgac 415  Q
    ||||||| |||||||||| | ||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  36280401 tcacataggtctctgactcaggattaaatataaataagtctctgactctgcacttccgttatcactttagtccctgac 36280324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 443
Target Start/End: Original strand, 20464069 - 20464213
Alignment:
Q  299 gcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccatta 398  Q
    |||||| | |||||| ||||| || |||||| |||| ||||||| | ||| ||| || ||||||||||||||| ||||| |||||| ||||||||  |||    
T  20464069 gcaaatggacactttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgtta 20464168  T
Q  399 tcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    ||||||||||||| ||| ||       ||||||||||||||||||    
T  20464169 tcactttagtccacgacgttaaataactctgttaagtgatgatgt 20464213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 410
Target Start/End: Complemental strand, 33428561 - 33428447
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    ||||||||| |||||||| |||||||| |||||| |||| ||||||||| ||| |||||| |  |||||||||||| |||||  ||||| |||| ||||     
T  33428561 tgagcaaatggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccg 33428462  T
Q  396 ttatcactttagtcc 410  Q
    || ||||||||||||    
T  33428461 ttgtcactttagtcc 33428447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 409
Target Start/End: Complemental strand, 53959187 - 53959113
Alignment:
Q  335 ctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtc 409  Q
    |||||||||| |||||||||| ||||||||||||||||||||   ||||| ||||||||| ||||||||||||||    
T  53959187 ctgtcacataggtctctgactcatgattaaatacaaataagttcatgactctgcacttccgttatcactttagtc 53959113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 394
Target Start/End: Original strand, 53957673 - 53957769
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    ||||||||||||||||| || | |||||||||| |||||||| ||||| ||  |||||| | || ||||||||||||||||| ||||| |||||||||    
T  53957673 gagcaaatagtcactttagtacttgattctgcaactcgctgttacataggttcctgactcagga-taaatacaaataagtctatgactctgcacttcc 53957769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 48574531 - 48574466
Alignment:
Q  350 ctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgac 415  Q
    |||||| | ||||||||||||||||||| |||||| ||||||| | ||||||||||||||| ||||    
T  48574531 ctgactcaggattaaatacaaataagtccctgactctgcactttcgttatcactttagtccttgac 48574466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 410
Target Start/End: Original strand, 50753820 - 50753928
Alignment:
Q  302 aatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatca 401  Q
    |||||||||||| ||||||   |||||| |||||||||||||| ||| || | | | ||||||||| ||| |||| ||||||| | ||||||  ||||||    
T  50753820 aatagtcactttagtccctagctctgcacctcgctgtcacataggtccctaattcaggattaaatataaacaagtttctgactctacacttctgttatca 50753919  T
Q  402 ctttagtcc 410  Q
    |||||||||    
T  50753920 ctttagtcc 50753928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 406
Target Start/End: Original strand, 3671035 - 3671145
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    ||||||| |||||||||||  ||| ||| | |||| ||| || ||||| | |||||||||| |  ||||||||||||||||||| ||||| | |||||||    
T  3671035 ttgagcatatagtcacttta-tccttgactttgcacctctctatcacaaaggtctctgactcagaattaaatacaaataagtctatgactctccacttcc 3671133  T
Q  395 attatcacttta 406  Q
     |||||||||||    
T  3671134 gttatcacttta 3671145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 409
Target Start/End: Complemental strand, 47075478 - 47075364
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    |||||||||| ||||||||  ||| ||| |||||| |||| ||||||||| |||  | ||| | ||||||||||||| ||  | |||||| | |||||||    
T  47075478 ttgagcaaatggtcactttaatccttgactctgcacctcgttgtcacataggtccgtcactcaagattaaatacaaagaaacccctgactctacacttcc 47075379  T
Q  395 attatcactttagtc 409  Q
     ||||||||||||||    
T  47075378 gttatcactttagtc 47075364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 410
Target Start/End: Complemental strand, 19115271 - 19115159
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| || | ||| |||||| |||| ||||||||| |||  | ||| | ||||||||||||| |||||  ||||| ||||||||| |    
T  19115271 gagcaaatagtcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagtc-atgactctgcacttccgt 19115173  T
Q  397 tatcactttagtcc 410  Q
    | | ||||||||||    
T  19115172 ttttactttagtcc 19115159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 418
Target Start/End: Original strand, 8168324 - 8168423
Alignment:
Q  318 cctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgacat 417  Q
    |||||||||||| |||||||||| | | |||| || || |||||||||||||||  ||||||||  | || ||||||||||||| ||| |||| ||||||    
T  8168324 cctgattctgcacctcgctgtcata-acgtctttggctcatgattaaatacaaaatagtctctggatatgtacttccattatcagttttgtccctgacat 8168422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 19331104 - 19331183
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataa 374  Q
    |||| ||||||  |||||| || ||||| |||||| || ||||||||||| ||| |||||| | ||||||||||||||||    
T  19331104 ttgaccaaataaccactttcgttcctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataa 19331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 371
Target Start/End: Complemental strand, 26652733 - 26652655
Alignment:
Q  293 aattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaa 371  Q
    ||||||| ||||||||||||  |||||||| | |||| ||||||||||| | |||| |||||| | ||| |||||||||    
T  26652733 aattgagtaaatagtcacttgggtccctgactttgcatctcgctgtcactttagtccctgacttaggataaaatacaaa 26652655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 49261659 - 49261550
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||| | ||||  ||  | | ||||||||| ||| |||||| | |||||||||||||   |||||| ||| |||| |||| |    
T  49261659 gagcaaatagtcactttagtccataattccacacattgttgtcacataggtccctgactcaggattaaatacaaa---gtctctaactctgcatttccgt 49261563  T
Q  397 tatcactttagtc 409  Q
    |||||||||||||    
T  49261562 tatcactttagtc 49261550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 409
Target Start/End: Original strand, 40205883 - 40205992
Alignment:
Q  301 aaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctc-tgactaatgattaaatacaaataagtctctgactttgcacttccattat 399  Q
    |||| |||| ||| ||||| || |||| |||||||||||| | | ||||| ||||| | ||||||| |||||  ||||||||| | ||||||||| ||||    
T  40205883 aaatggtcattttagtcccggactctgtagctcgctgtcataaaggtctcttgactcacgattaaaaacaaagtagtctctgaatgtgcacttccgttat 40205982  T
Q  400 cactttagtc 409  Q
    || |||||||    
T  40205983 cagtttagtc 40205992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 48809697 - 48809661
Alignment:
Q  379 ctgactttgcacttccattatcactttagtccatgac 415  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  48809697 ctgactctgcacttccgttatcactttagtccatgac 48809661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 297 - 443
Target Start/End: Complemental strand, 17330355 - 17330209
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    |||||||||||| |||| |||| |||||||||||||| |||||||||| ||| |||||| | |||||||||||||||||||||||||| |||| |||| |    
T  17330355 gagcaaatagtcgctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctgactctgcatttccgt 17330256  T
Q  397 tatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    ||||||||||||||||||| ||       ||||||||||||||||||    
T  17330255 tatcactttagtccatgacgttaagttattctgttaagtgatgatgt 17330209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 296 - 415
Target Start/End: Complemental strand, 32766365 - 32766246
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| |||||||| |||||| |||| ||||||||| ||| |||||| | ||||||||||||||||||| |||||| |||||||||     
T  32766365 tgagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccg 32766266  T
Q  396 ttatcactttagtccatgac 415  Q
    ||||||||||||||| ||||    
T  32766265 ttatcactttagtccttgac 32766246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 298 - 418
Target Start/End: Complemental strand, 24459570 - 24459450
Alignment:
Q  298 agcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccatt 397  Q
    |||||| ||||||||| |||||||| |||||| |||||||||||||| ||| |||| | | |||||||||||||||||||||||||  |||||||| |||    
T  24459570 agcaaagagtcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcacttctatt 24459471  T
Q  398 atcactttagtccatgacatt 418  Q
    ||||||||||||| |||||||    
T  24459470 atcactttagtccctgacatt 24459450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 31091652 - 31091540
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||||||| |||||| || ||||||||||| ||| |||||| | ||||||||||||||||||| |||||| ||||||||| |    
T  31091652 gagcaaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgt 31091553  T
Q  397 tatcactttagtc 409  Q
    |||||||||||||    
T  31091552 tatcactttagtc 31091540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 415
Target Start/End: Original strand, 32764935 - 32765054
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||| ||||||||||||| |||||||||||||||||| | ||||| ||| |||||||||| | ||||||||||||||||||| |||||| |||||||||     
T  32764935 tgagtaaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccg 32765034  T
Q  396 ttatcactttagtccatgac 415  Q
    ||||||||||| ||| ||||    
T  32765035 ttatcactttaatccctgac 32765054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 296 - 408
Target Start/End: Complemental strand, 2911617 - 2911505
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||||||| |  ||||| |   ||||||| ||||||||||||||||||||||||||     
T  2911617 tgagcaaatagtcactttggtctctggttctgcagctcgctgtcacataaggccatgactcaaagttaaatataaataagtctctgactttgcacttccg 2911518  T
Q  396 ttatcactttagt 408  Q
    |||||||||||||    
T  2911517 ttatcactttagt 2911505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 31090165 - 31090280
Alignment:
Q  300 caaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattat 399  Q
    |||||||||| ||| |||||||||||||||||||||||||||||| |||  ||||| | ||||||||| |||||||||||||||| ||||||||| ||||    
T  31090165 caaatagtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcacttccgttat 31090264  T
Q  400 cactttagtccatgac 415  Q
     | |||||||| ||||    
T  31090265 gattttagtccctgac 31090280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 295 - 409
Target Start/End: Original strand, 24458056 - 24458170
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    ||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||| |||||| |  ||||||||||||||||| ||||||| | ||||| |    
T  24458056 ttgagcaaatagtcactttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctgactctacactttc 24458155  T
Q  395 attatcactttagtc 409  Q
     ||||||||||||||    
T  24458156 gttatcactttagtc 24458170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 298 - 443
Target Start/End: Original strand, 7073638 - 7073783
Alignment:
Q  298 agcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccatt 397  Q
    |||||||||||||||| |||| | |||||||||||  ||||| |||| |||||||| |   |||||||||||||||||||||||| | ||||||||| ||    
T  7073638 agcaaatagtcactttagtccttcattctgcagcttactgtcgcataggtctctgattcgggattaaatacaaataagtctctgattctgcacttccgtt 7073737  T
Q  398 atcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    ||||||||||||| |||| ||       ||||||||||||||||||    
T  7073738 atcactttagtccctgacgttaagttattctgttaagtgatgatgt 7073783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 443
Target Start/End: Original strand, 2910102 - 2910244
Alignment:
Q  301 aaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatc 400  Q
    ||||| ||||||| |||  ||||| |||||||||||||||||||  || ||||||   |||||||||||||||||||||||||| ||||||||| || ||    
T  2910102 aaataatcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgcacttcctttgtc 2910201  T
Q  401 actttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    |||||||||| |||| ||       ||||||||||||||||||    
T  2910202 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 2910244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 408
Target Start/End: Original strand, 39014998 - 39015114
Alignment:
Q  292 taattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcact 391  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||| ||||||  ||  ||||| | ||||||||||||||| |||| ||||| ||||||    
T  39014998 taattgagcaaataatcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtctttgactctgcact 39015097  T
Q  392 tccattatcactttagt 408  Q
    | |||||||| ||||||    
T  39015098 ttcattatcattttagt 39015114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 409
Target Start/End: Complemental strand, 39016508 - 39016396
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacat--aagtctctgactaatgattaaatacaaataagtctctgactttgcactt 392  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||  |  ||||||||| | |||||||||||||||||||    ||| |||||||    
T  39016508 ttgagcaaatagtcactttagtctctgattctgcagctcgctgtcacatacatctctctgactcaggattaaatacaaataagtc----actctgcactt 39016413  T
Q  393 ccattatcactttagtc 409  Q
    || ||||||||||||||    
T  39016412 ccgttatcactttagtc 39016396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 443
Target Start/End: Complemental strand, 17466926 - 17466807
Alignment:
Q  324 tctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgacattnnnnn 423  Q
    |||||| |||||||||||||||| | |||||| | ||||||||||||| |||||||||||| ||||||||| |||||||||||||| | ||| ||         
T  17466926 tctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttagtctaagacgttaaata 17466827  T
Q  424 nntctgttaagtgatgatgt 443  Q
      ||||||||||||||||||    
T  17466826 attctgttaagtgatgatgt 17466807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 441
Target Start/End: Complemental strand, 40000456 - 40000315
Alignment:
Q  300 caaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattat 399  Q
    ||||| |||||||| |||||||| |||||| |||||||| |||||  || |||| | | |||||||||||||||||||||| ||  ||||||||| ||||    
T  40000456 caaattgtcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcacttccgttat 40000357  T
Q  400 cactttagtccatgacattnnnnnnntctgttaagtgatgat 441  Q
    ||||||| ||| |||| ||       ||||||||||||||||    
T  40000356 cactttattccctgacgttaagaaaatctgttaagtgatgat 40000315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 402
Target Start/End: Complemental strand, 5915118 - 5915012
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| |||| ||| |||||| |||||| ||| ||| |||| ||||| |  |||||||||||| ||||| || ||| |||||||||     
T  5915118 tgagcaaatagtcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtcactaactctgcacttccg 5915019  T
Q  396 ttatcac 402  Q
    |||||||    
T  5915018 ttatcac 5915012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 408
Target Start/End: Complemental strand, 21733899 - 21733785
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgac---taatgattaaatacaaataagtctctgactttgcacttc 393  Q
    ||||||||||||||| | |||||||| | || |  ||| ||||||| | ||| |||||   | |||||||||||||||||||||||||||| ||||||||    
T  21733899 gagcaaatagtcactctagtccctgactttgtacatcgttgtcacaaaggtccctgactcatcatgattaaatacaaataagtctctgactctgcacttc 21733800  T
Q  394 cattatcactttagt 408  Q
    | | |||||||||||    
T  21733799 cgtcatcactttagt 21733785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 415
Target Start/End: Original strand, 14704048 - 14704122
Alignment:
Q  341 cataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgac 415  Q
    |||| ||| |||||| | ||||||||||||||||||| || ||| ||||||||| ||||||||||||||| ||||    
T  14704048 cataggtccctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcactttagtccctgac 14704122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 408
Target Start/End: Complemental strand, 34037793 - 34037687
Alignment:
Q  302 aatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatca 401  Q
    |||||||||||| |||| ||| |||||| || ||||||| | | |||  | ||| | |||||||||||||||||||| ||||| ||||||||  ||||||    
T  34037793 aatagtcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgcacttctgttatca 34037694  T
Q  402 ctttagt 408  Q
    |||||||    
T  34037693 ctttagt 34037687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 415
Target Start/End: Original strand, 33161797 - 33161883
Alignment:
Q  329 agctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgac 415  Q
    |||||| ||||||| | ||||||| || | |||||||| |||| ||||||| |||| || |||||| ||||||||||||||| ||||    
T  33161797 agctcgttgtcacaaaggtctctgccttaggattaaatgcaaagaagtctcagactatgtacttccgttatcactttagtccttgac 33161883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 5914351 - 5914420
Alignment:
Q  346 gtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgac 415  Q
    |||||||||| |  |||||||||||| |||||  |||||||||||| || |||||||||||| |||||||    
T  5914351 gtctctgactcacaattaaatacaaagaagtcagtgactttgcactcccgttatcactttagaccatgac 5914420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 14705172 - 14705115
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgac 354  Q
    ||||||||||||||||| ||||| || |||||| |||||||||||||| || ||||||    
T  14705172 gagcaaatagtcactttggtcccggactctgcacctcgctgtcacataggtttctgac 14705115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 410
Target Start/End: Original strand, 7412124 - 7412203
Alignment:
Q  331 ctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtcc 410  Q
    |||| |||||||||  ||||||||| | ||||||||| ||| ||||| ||||   ||||||||| |||||||||||||||    
T  7412124 ctcgttgtcacatagatctctgactcaagattaaatataaagaagtcactgatagtgcacttccgttatcactttagtcc 7412203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 410
Target Start/End: Complemental strand, 31814467 - 31814356
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||  | | |||||| |||||||| | |   |||||||||| |  |||||||| ||| |||| | ||||| ||||||||| |    
T  31814467 gagcaaatagtcactttagtcatttactctgcacctcgctgttaaag--gtctctgactcagaattaaatataaagaagtttttgactctgcacttccgt 31814370  T
Q  397 tatcactttagtcc 410  Q
    ||||||||||||||    
T  31814369 tatcactttagtcc 31814356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 34582791 - 34582677
Alignment:
Q  301 aaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatc 400  Q
    |||| ||||| || |||||||| |||||| || ||||| ||| | |||  |||||   |||||||||||||  |||| |||| | ||||||||| |||||    
T  34582791 aaatggtcacgttagtccctgactctgcaccttgctgttacaaaggtcattgactcgggattaaatacaaagtagtccctgaatgtgcacttccgttatc 34582692  T
Q  401 actttagtccatgac 415  Q
    |||||||||| ||||    
T  34582691 actttagtccctgac 34582677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 409
Target Start/End: Original strand, 8420010 - 8420123
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||| |||| |||||||| |||||||| ||||||  |||| |||||| | ||| |||| | | |||||||||||||  |||| |||| | ||||||||      
T  8420010 tgagtaaatggtcactttggtccctgactctgcatttcgcggtcacaaatgtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctg 8420109  T
Q  396 ttatcactttagtc 409  Q
    |||||| |||||||    
T  8420110 ttatcagtttagtc 8420123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 409
Target Start/End: Complemental strand, 38985051 - 38985002
Alignment:
Q  360 attaaatacaaataagtctctgactttgcacttccattatcactttagtc 409  Q
    |||||||||||| |||||  ||||| ||||||||| ||||||||||||||    
T  38985051 attaaatacaaagaagtccttgactctgcacttccgttatcactttagtc 38985002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 17466101 - 17466157
Alignment:
Q  359 gattaaatacaaataagtctctgactttgcacttccattatcactttagtccatgac 415  Q
    ||||||||||||| |  ||||||||| ||||||||| || |||||||||||| ||||    
T  17466101 gattaaatacaaagatatctctgactctgcacttccgttttcactttagtccctgac 17466157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 43380617 - 43380665
Alignment:
Q  336 tgtcacataagtctctgactaatgattaaatacaaataagtctctgact 384  Q
    ||||||| | |||||||||| ||||||||||||| | ||||||||||||    
T  43380617 tgtcacaaaggtctctgactcatgattaaatacatagaagtctctgact 43380665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 298 - 410
Target Start/End: Original strand, 116054 - 116166
Alignment:
Q  298 agcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccatt 397  Q
    |||||||||||||||| || ||| ||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||| |||||| ||||||||| ||    
T  116054 agcaaatagtcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgtt 116153  T
Q  398 atcactttagtcc 410  Q
    |||||||||||||    
T  116154 atcactttagtcc 116166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 296 - 409
Target Start/End: Original strand, 30747996 - 30748109
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||| ||| |||||| | ||||||||||||| |||||||||||| | ||||| |     
T  30747996 tgagcaaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacactttcg 30748095  T
Q  396 ttatcactttagtc 409  Q
    ||||||||||||||    
T  30748096 ttatcactttagtc 30748109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 406
Target Start/End: Original strand, 31218948 - 31219062
Alignment:
Q  292 taattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcact 391  Q
    ||||||||||||| ||||||||  || |||| |||||| |||||||||||||| |||  | ||| | ||||||||||||| ||||  |||||| ||||||    
T  31218948 taattgagcaaatggtcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcact 31219047  T
Q  392 tccattatcacttta 406  Q
    ||| |||||||||||    
T  31219048 tccgttatcacttta 31219062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 410
Target Start/End: Original strand, 23507947 - 23508059
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| ||| ||| | || || ||| |||||||||| ||  |||| | | ||||||||||||| || ||| ||||||| ||||||| |    
T  23507947 gagcaaatagtcactttagtctctgct-ctacacctccctgtcacataggttcctgattcaggattaaatacaaacaaatctatgactttacacttcctt 23508045  T
Q  397 tatcactttagtcc 410  Q
    ||||||||||||||    
T  23508046 tatcactttagtcc 23508059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 409
Target Start/End: Complemental strand, 31219290 - 31219173
Alignment:
Q  292 taattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcact 391  Q
    |||||||  |||| ||||||||  ||||||| |||||| |||||||||||||| |||  | ||| | ||||||||||||| ||||  ||||||   ||||    
T  31219290 taattgaaaaaatggtcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactcgacact 31219191  T
Q  392 tccattatcactttagtc 409  Q
    ||| ||||||||||||||    
T  31219190 tccgttatcactttagtc 31219173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 392
Target Start/End: Complemental strand, 6468910 - 6468811
Alignment:
Q  293 aattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcactt 392  Q
    ||||||| |||| ||||||||  ||  ||| ||||||  ||||||||||| | ||| |||||| |||||||||||||||  ||||||||| | |||||||    
T  6468910 aattgagtaaatggtcactttgttctttgactctgcatatcgctgtcacaaaggtccctgactcatgattaaatacaaaatagtctctgaatgtgcactt 6468811  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 410
Target Start/End: Original strand, 47874560 - 47874675
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    ||||| ||||||||||||| ||| |||||||||||||||||| ||||||| ||| |||||| | ||||||||||||||||||| |||| | |||||||||    
T  47874560 ttgagtaaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcacttcc 47874659  T
Q  395 attatcactttagtcc 410  Q
     |||||||||||||||    
T  47874660 gttatcactttagtcc 47874675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 297 - 443
Target Start/End: Original strand, 42278047 - 42278193
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||||||| ||| ||||||   ||||||||||||||||||  |||||| ||||||||| |    
T  42278047 gagcaaatagtcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatacaaataagttcctgactctgcacttccgt 42278146  T
Q  397 tatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    |||||||||| ||| |||| ||       ||||||||||||||||||    
T  42278147 tatcactttaatccctgacgttaaaaaaatctgttaagtgatgatgt 42278193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 298 - 415
Target Start/End: Complemental strand, 47878608 - 47878491
Alignment:
Q  298 agcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccatt 397  Q
    ||||||||||||||||  ||||||| |||||| |||||||| ||||| ||| ||||||   ||||||||||||||||||| |||||| | ||||||| ||    
T  47878608 agcaaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgtt 47878509  T
Q  398 atcactttagtccatgac 415  Q
    ||||||||||||||||||    
T  47878508 atcactttagtccatgac 47878491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 53771182 - 53771062
Alignment:
Q  289 ttataattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgc 388  Q
    |||||||||||||||| |||||||| |||||||| |||||| |||| ||||||||| ||| |||||| |  |||||||||||| ||| | |||||| |||    
T  53771182 ttataattgagcaaatggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgc 53771083  T
Q  389 acttccattatcactttagtc 409  Q
    |||||| ||||||||||||||    
T  53771082 acttccgttatcactttagtc 53771062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 297 - 413
Target Start/End: Original strand, 26170638 - 26170754
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||| | ||| ||| |||| | |||| |||| ||| ||| |||| ||||||| | ||||||||||||||||||  || ||| |||||||||||    
T  26170638 gagcaaatagttagtttagtctctgactttgcacctcgttgttacaaaagtatctgacttaagattaaatacaaataagttccttactctgcacttccat 26170737  T
Q  397 tatcactttagtccatg 413  Q
    |||||||||||||||||    
T  26170738 tatcactttagtccatg 26170754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 297 - 405
Target Start/End: Original strand, 31844720 - 31844828
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||||||| ||||||   |||||| |||||||||||||| ||| |||||| | ||||||||||||| ||||| || ||| | ||||||| |    
T  31844720 gagcaaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccctaactctacacttccct 31844819  T
Q  397 tatcacttt 405  Q
    |||||||||    
T  31844820 tatcacttt 31844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 26173005 - 26172951
Alignment:
Q  359 gattaaatacaaataagtctctgactttgcacttccattatcactttagtccatg 413  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  26173005 gattaaatacaaataagtctctgactctgcacttccgttatcactttagtccatg 26172951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 406
Target Start/End: Original strand, 54574423 - 54574532
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    ||||||||||||| |||  | ||| | |||||| |||||||||||||| |||||||||| | ||||||||||||||||||   | ||| ||||||||| |    
T  54574423 gagcaaatagtcattttgcttcctcactctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagttcttaactctgcacttccgt 54574522  T
Q  397 tatcacttta 406  Q
    ||||||||||    
T  54574523 tatcacttta 54574532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 409
Target Start/End: Original strand, 53770323 - 53770443
Alignment:
Q  289 ttataattgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgc 388  Q
    ||||||| ||| |||| |||||||| ||| |||| |||||| |||||  ||||||| ||  |||||| |  |||||||||||| |||||| ||||| |||    
T  53770323 ttataatggagtaaatggtcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtctatgactctgc 53770422  T
Q  389 acttccattatcactttagtc 409  Q
    ||||||||||||||| |||||    
T  53770423 acttccattatcactctagtc 53770443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 409
Target Start/End: Complemental strand, 4703344 - 4703230
Alignment:
Q  295 ttgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcc 394  Q
    |||||||||| |||||||| ||  |||| ||| || |||||||||||||| ||| || ||| |  |||||||||||| |||||| ||||| | |||||||    
T  4703344 ttgagcaaattgtcactttagttactgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttcc 4703245  T
Q  395 attatcactttagtc 409  Q
     ||||||||||||||    
T  4703244 gttatcactttagtc 4703230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 410
Target Start/End: Original strand, 4701797 - 4701876
Alignment:
Q  331 ctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatcactttagtcc 410  Q
    |||||||||||| | |||| ||||| ||||||||||||||| ||||| | |||| |||||||||  ||||||||||||||    
T  4701797 ctcgctgtcacaaaggtctatgacttatgattaaatacaaagaagtccccgactatgcacttccgctatcactttagtcc 4701876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 19050297 - 19050348
Alignment:
Q  358 tgattaaatacaaataagtctctgactttgcacttccattatcactttagtc 409  Q
    |||||||||||||| ||||||| |||| ||||||||| ||||||||||||||    
T  19050297 tgattaaatacaaagaagtctcggactctgcacttccgttatcactttagtc 19050348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 384
Target Start/End: Complemental strand, 19051359 - 19051269
Alignment:
Q  294 attgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgact 384  Q
    ||||||||||| |||||||| |||||||| ||| || |||| || |||| | ||| ||||||   ||||||||||||| ||||||||||||    
T  19051359 attgagcaaatggtcactttagtccctgactctacacctcgttggcacaaaggtcactgactcgagattaaatacaaagaagtctctgact 19051269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 42392003 - 42391933
Alignment:
Q  307 tcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtc 377  Q
    ||||||| ||| |||| || ||| ||| |||||||||| |||||||||| |||||||||||||||| ||||    
T  42392003 tcactttagtctctgactccgcacctcactgtcacataggtctctgactcatgattaaatacaaattagtc 42391933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 409
Target Start/End: Original strand, 39868919 - 39869030
Alignment:
Q  296 tgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttcca 395  Q
    |||| |||| || ||||| ||| |||| |||||| |||||||| ||| | ||| |||||| || |||||||||||| |||| || |||| |||||||||     
T  39868919 tgagtaaattgttactttagtctctgactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagt-tc-gactctgcacttccg 39869016  T
Q  396 ttatcactttagtc 409  Q
    ||||||||||||||    
T  39869017 ttatcactttagtc 39869030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 415
Target Start/End: Complemental strand, 48740145 - 48740027
Alignment:
Q  297 gagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccat 396  Q
    |||||||| |||||||| |||| ||  |||||| |||  |||||| ||  || |||||| || |||||||||||| ||||| |  ||| ||||||||  |    
T  48740145 gagcaaatggtcactttagtccatgtctctgcacctcattgtcacgtagatccctgactcataattaaatacaaagaagtccccaactctgcacttctgt 48740046  T
Q  397 tatcactttagtccatgac 415  Q
    |||||||||||||| ||||    
T  48740045 tatcactttagtccctgac 48740027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 50694810 - 50694893
Alignment:
Q  360 attaaatacaaataagtctctgactttgcacttccattatcactttagtccatgacattnnnnnnntctgttaagtgatgatgt 443  Q
    |||||||| |||||||| ||||| | ||||||||| ||||| ||||||||| |||| ||       ||||||||||||||||||    
T  50694810 attaaatataaataagtttctgattctgcacttccgttatctctttagtccctgacgttaaaaaattctgttaagtgatgatgt 50694893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 409
Target Start/End: Complemental strand, 79811 - 79696
Alignment:
Q  294 attgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttc 393  Q
    ||||||||||||||||||||  ||||||| || ||| |||| ||| ||||||||  |||||| ||||||||||||||| |||||| ||||| |||| |||    
T  79811 attgagcaaatagtcactttaatccctgactcggcacctcgttgttacataagttcctgactcatgattaaatacaaagaagtctttgactctgcatttc 79712  T
Q  394 cattatcactttagtc 409  Q
     ||||||| |||||||    
T  79711 tattatcattttagtc 79696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 409
Target Start/End: Original strand, 79068 - 79183
Alignment:
Q  294 attgagcaaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttc 393  Q
    |||| ||||||||||| ||| || ||||| |||||| |||||||||||||| |||  ||||| ||||||||||| ||| |||||  ||||||||||| ||    
T  79068 attgggcaaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtccttgactttgcacctc 79167  T
Q  394 cattatcactttagtc 409  Q
    |  |||||||||||||    
T  79168 cgatatcactttagtc 79183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 74433 - 74358
Alignment:
Q  302 aatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtc 377  Q
    |||||||| ||| |||||||| |||||| ||| |||||||||| ||| || ||| ||||||||||||||| |||||    
T  74433 aatagtcagtttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtc 74358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 409
Target Start/End: Original strand, 5601 - 5709
Alignment:
Q  301 aaatagtcacttttgtccctgattctgcagctcgctgtcacataagtctctgactaatgattaaatacaaataagtctctgactttgcacttccattatc 400  Q
    |||| |||||||| ||| || | | |||| |||| ||| ||| | |||||||||| |  |||||||||||| ||||| |||||| | ||||||| |||||    
T  5601 aaattgtcactttagtcactcactttgcacctcgttgtgacaaatgtctctgactcagaattaaatacaaagaagtccctgactctacacttccgttatc 5700  T
Q  401 actttagtc 409  Q
    |||||||||    
T  5701 actttagtc 5709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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