View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_31 (Length: 449)
Name: NF3710_low_31
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 236 - 434
Target Start/End: Complemental strand, 29863668 - 29863470
Alignment:
| Q |
236 |
gattcacatgggttattttcttcaaacaaagaattcataatgagaaatatctatatagatcatctcagtgagaaatgatcatggagaggaattttaaaat |
335 |
Q |
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| T |
29863668 |
gattcacatgggttatcttcttcaaacaaagaattcagaatgagaaatatctatatagatcatctcagtgagaaatgatcatggagaggaattttaaaat |
29863569 |
T |
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| Q |
336 |
gaatggttcaagatatannnnnnnatgagaatgatgtctcttataattttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatat |
434 |
Q |
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| T |
29863568 |
gaatggttcaagatatatttttttatgagaatgatgtctcttataattttcccgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatat |
29863470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 29848569 - 29848372
Alignment:
| Q |
10 |
aagaatatgtgaattattaaccaagcatatatgcttaaattatcttggaaacatttctaaccctaagaagcttttgggttagaggaatgaaaacaaaata |
109 |
Q |
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| T |
29848569 |
aagaatatgtgaataattaaccaatcatatatgcttaaattatcttggaaacgtttctaaccctaagaagcttttgtgttagaggaatgaaaacaaaata |
29848470 |
T |
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| Q |
110 |
-tcattttggtgtgcttgctctacctgggatcgaattgaaatcaaattgttcgaatactcagctttcaatatatcaaaataaatagtcttggtggaaa |
206 |
Q |
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| T |
29848469 |
ttcattttggtgtgcttgctctacctgagatcgaattgaaatctaattgttcaaatattcggctttggagatatcaaaatagatagtcttggaggaaa |
29848372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 263 - 434
Target Start/End: Complemental strand, 29848374 - 29848208
Alignment:
| Q |
263 |
aaagaattcataatgagaaatatctatatagatcatctcagtgagaaatgatcatggagaggaattttaaaatgaatggttcaagatatannnnnnnatg |
362 |
Q |
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|||||||| | ||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| || ||| |
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| T |
29848374 |
aaagaatttagaatgagaaagatctata--gatcatct-agtgagaaatgatcatggagaagaattttaaaatgaatgcttcaagacat--ttttttatg |
29848280 |
T |
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| Q |
363 |
agaatgatgtctcttataattttcctgtccaagaacacct-caacaaaatgaagttgttaaaaagaaaaatat |
434 |
Q |
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|||||||| ||||||||||||||| |||| || ||||||| ||| |||||||||||||||||||| |||||| |
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| T |
29848279 |
agaatgatatctcttataattttcatgtctaa-aacacctaaaacgaaatgaagttgttaaaaagataaatat |
29848208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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