View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_32 (Length: 446)
Name: NF3710_low_32
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 5822237 - 5822666
Alignment:
| Q |
1 |
ttattcaaacgaattctaatgaaaagaatgtaacttaaatatacctataattaaataaaacattattatttatacaaagttgatgcttatttcttataga |
100 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822237 |
ttattcaaacgaattctaatgaaaagaatg-agcttaaatataaatataattaaataaaacattattatttatacaaagttgatgcttatttcttataga |
5822335 |
T |
|
| Q |
101 |
aaa-gtctttttacggattaagttgttttacgatatgaagtccagttgaaatctccacctttcaatcatttctcaaggactttgaccacatatgctagag |
199 |
Q |
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||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
5822336 |
aaaagtctttttatggattaagttgttttactatatgaagtccatttgaaatctccaccattcattcatttctcaaggactttgaccacatatgctagag |
5822435 |
T |
|
| Q |
200 |
actgatgggagagtgttatttaaccccttgcagaagatacgtttcagtgataactcattttcctttgaaatctcagaaataggtgtaggtgcagatgctg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822436 |
actgatgggagagtgttatttaaccccttgcagaagatacgtttcagtgataactcattttcctttgaaatctcagaaataggtgtaggtgcagatgctg |
5822535 |
T |
|
| Q |
300 |
gtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgagggttgttcttgtgttt |
399 |
Q |
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| T |
5822536 |
gtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagggttgttcttgtgttt |
5822635 |
T |
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| Q |
400 |
ctcacaaagttccggcaaaaatactcctaga |
430 |
Q |
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| T |
5822636 |
ctcacaaagttccggcaaaaatactcctaga |
5822666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 285 - 427
Target Start/End: Complemental strand, 5829368 - 5829226
Alignment:
| Q |
285 |
taggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgagg |
384 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5829368 |
taggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagg |
5829269 |
T |
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| Q |
385 |
gttgttcttgtgtttctcacaaagttccggcaaaaatactcct |
427 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5829268 |
gttggtcttgtgtttctcacaaagttccggcaaaaatactcct |
5829226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 286 - 427
Target Start/End: Original strand, 5831980 - 5832121
Alignment:
| Q |
286 |
aggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgaggg |
385 |
Q |
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|||||||| ||| ||||||||| |||| |||| ||||| || ||||| ||||||| ||||||||| ||||| ||| |||| |||||||||||||| |
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| T |
5831980 |
aggtgcagctgcaggtgctaacacaatgtcctctgaaactgaagaagccgggccaaatgcagctccggagctcacaagctcgaccatagcacgacgaggg |
5832079 |
T |
|
| Q |
386 |
ttgttcttgtgtttctcacaaagttccggcaaaaatactcct |
427 |
Q |
| |
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||| |||||||||||||||| ||||| ||||||||||||||| |
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| T |
5832080 |
ttggtcttgtgtttctcacatagttctggcaaaaatactcct |
5832121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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