View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_33 (Length: 444)
Name: NF3710_low_33
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 829370 - 828949
Alignment:
| Q |
10 |
attattcttctcaggaaggaacaaatagtagcattattgcagagttagaatttatacaagtagttattattccatgatacaatatttagaagatagcgtt |
109 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
829370 |
attattcttctcgggaaggaacaaatagtagcattattgcagagttagaatttatacaagtagttattattccatgatacaatatttagaagatagcgtt |
829271 |
T |
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| Q |
110 |
ctagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgtagattattcctatgggccaatnnnnnnnnnnnnnnnnncaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
829270 |
ctagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgtagattattcctatgggccaatacaacaacaacaacaaccaa |
829171 |
T |
|
| Q |
210 |
gccttatccaactaagtgggattcctctataccaaaagattaaatttgttttgcacatgcattcaatcaaaagttatatgctaacagtattttaaattaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
829170 |
gccttatccaactaagtgggattcctctataccaaaagattaaatttgttttgcacgtgcattcaatcaaaagttatatgctaacagtattttaaattaa |
829071 |
T |
|
| Q |
310 |
attttaatagatcaaatccaaattttattgttgttgttg---ttgtgctgcatgtagcattttgttttggaggaaaacatgcttgaggttgattgtccct |
406 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
829070 |
attttaatagatcaaatccgaattttattgttgttgttgttgttgtgctgcatgtagcattttgttttggaggaaaacatgcttgaggttgattgtccct |
828971 |
T |
|
| Q |
407 |
gtgtgacaccagaggttgttct |
428 |
Q |
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| T |
828970 |
gtgtgacaccagaggttgttct |
828949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 273 - 428
Target Start/End: Complemental strand, 835475 - 835319
Alignment:
| Q |
273 |
caatcaaaagttatatgctaacagtattt-taaattaaattttaatagatcaaatccaaattttattgttgttgttgttgtgctgcatgtagcattttgt |
371 |
Q |
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|||||||||||| |||||||||| ||| | ||||||||||||||||| ||||||||| || ||||| |||||||||||| ||||| |||||||||| | |
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| T |
835475 |
caatcaaaagttttatgctaacaatatatataaattaaattttaataaatcaaatcctaaagttatttttgttgttgttgggctgctggtagcattttat |
835376 |
T |
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| Q |
372 |
tttggaggaaaacatgcttgaggttgattgtccctgtgtgacaccagaggttgttct |
428 |
Q |
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| T |
835375 |
gttggaggaaaagatgcttgaggttgattgtccctgtgtgacaccagaggttgttct |
835319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 21202239 - 21202297
Alignment:
| Q |
111 |
tagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgta |
169 |
Q |
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|||| |||| |||||||| |||||| || ||||| |||||||||||| ||||||||||| |
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| T |
21202239 |
tagcatagtggaatttgaacaaacttctttttctgcgatccacaatttacaacactgta |
21202297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 941368 - 941299
Alignment:
| Q |
359 |
tgtagcattttgttttggaggaaaacatgcttgaggttgattgtccctgtgtgacaccagaggttgttct |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| |
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| T |
941368 |
tgtagcattttgttttggaggaaaacatgcttgaggttgattgtccatctgtgacgccggaggttgttct |
941299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 37985029 - 37985061
Alignment:
| Q |
114 |
cgtagtagaatttgagcaaactactatttctac |
146 |
Q |
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| T |
37985029 |
cgtagtagaatttgagcaaactgctatttctac |
37985061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 42201063 - 42201121
Alignment:
| Q |
111 |
tagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgta |
169 |
Q |
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|||| |||| |||||||| |||||| || ||||| |||||||||||| ||||||||||| |
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| T |
42201063 |
tagcatagtggaatttgaacaaacttctttttctgcgatccacaatttacaacactgta |
42201121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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