View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_low_37 (Length: 426)

Name: NF3710_low_37
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_low_37
NF3710_low_37
[»] chr4 (17 HSPs)
chr4 (21-411)||(7394690-7395062)
chr4 (76-411)||(24605067-24605384)
chr4 (83-184)||(19928868-19928964)
chr4 (83-185)||(13979122-13979219)
chr4 (69-173)||(23653249-23653348)
chr4 (354-406)||(26703309-26703361)
chr4 (22-185)||(26703524-26703681)
chr4 (83-173)||(18859767-18859852)
chr4 (71-184)||(49636558-49636666)
chr4 (69-173)||(11702632-11702731)
chr4 (332-411)||(37176859-37176939)
chr4 (68-155)||(14701879-14701961)
chr4 (71-125)||(3719584-3719638)
chr4 (17-55)||(11560737-11560775)
chr4 (132-178)||(37176700-37176746)
chr4 (129-173)||(10385963-10386007)
chr4 (91-155)||(17670309-17670368)
[»] chr8 (23 HSPs)
chr8 (19-411)||(587238-587612)
chr8 (19-411)||(626310-626684)
chr8 (338-411)||(12820709-12820783)
chr8 (84-173)||(27863599-27863683)
chr8 (83-155)||(13332077-13332144)
chr8 (69-173)||(30645448-30645547)
chr8 (83-173)||(14187990-14188075)
chr8 (71-125)||(24435008-24435062)
chr8 (71-125)||(24445054-24445108)
chr8 (83-184)||(22654251-22654347)
chr8 (83-155)||(5828015-5828082)
chr8 (332-411)||(5828249-5828329)
chr8 (71-155)||(17013095-17013174)
chr8 (69-173)||(18696020-18696119)
chr8 (69-173)||(20262530-20262629)
chr8 (69-173)||(21049160-21049259)
chr8 (83-155)||(39660020-39660087)
chr8 (336-411)||(41778805-41778880)
chr8 (83-173)||(5964245-5964330)
chr8 (359-413)||(13097156-13097210)
chr8 (71-125)||(17544027-17544081)
chr8 (84-155)||(24903547-24903613)
chr8 (126-173)||(31986302-31986349)
[»] chr3 (32 HSPs)
chr3 (25-415)||(36036770-36037142)
chr3 (17-184)||(18551592-18551753)
chr3 (22-185)||(4250314-4250471)
chr3 (69-173)||(18883188-18883287)
chr3 (354-413)||(9155050-9155109)
chr3 (354-413)||(9158232-9158291)
chr3 (82-173)||(20536628-20536714)
chr3 (83-173)||(2784110-2784195)
chr3 (83-173)||(4225896-4225981)
chr3 (71-173)||(10963384-10963481)
chr3 (71-173)||(10966893-10966990)
chr3 (83-173)||(30158072-30158157)
chr3 (71-184)||(5887017-5887125)
chr3 (71-184)||(5897001-5897109)
chr3 (71-184)||(18515762-18515870)
chr3 (69-173)||(2279663-2279762)
chr3 (69-165)||(9154790-9154881)
chr3 (71-155)||(10959877-10959956)
chr3 (332-411)||(18551888-18551968)
chr3 (83-178)||(19868971-19869061)
chr3 (84-179)||(28327433-28327523)
chr3 (84-179)||(28330758-28330848)
chr3 (69-155)||(6173414-6173495)
chr3 (83-129)||(16314672-16314718)
chr3 (83-129)||(18495666-18495712)
chr3 (82-184)||(23374762-23374859)
chr3 (83-173)||(25888513-25888598)
chr3 (83-173)||(42354456-42354541)
chr3 (83-184)||(16414788-16414884)
chr3 (83-165)||(54736181-54736259)
chr3 (83-155)||(27054859-27054927)
chr3 (83-173)||(9157977-9158062)
[»] chr6 (32 HSPs)
chr6 (17-409)||(20189251-20189626)
chr6 (17-409)||(22146365-22146740)
chr6 (210-363)||(16731443-16731597)
chr6 (17-170)||(16731296-16731444)
chr6 (69-411)||(9313605-9313929)
chr6 (83-413)||(28117828-28118134)
chr6 (332-411)||(12980556-12980636)
chr6 (332-413)||(12983441-12983523)
chr6 (332-411)||(12747031-12747111)
chr6 (332-411)||(28894297-28894377)
chr6 (69-173)||(34502317-34502416)
chr6 (332-413)||(15578732-15578814)
chr6 (17-155)||(7560238-7560370)
chr6 (17-185)||(12746729-12746894)
chr6 (82-185)||(33679222-33679320)
chr6 (83-173)||(5618262-5618347)
chr6 (69-155)||(11410739-11410820)
chr6 (83-173)||(14966219-14966304)
chr6 (83-185)||(15578948-15579045)
chr6 (83-173)||(31123421-31123506)
chr6 (83-185)||(35027166-35027263)
chr6 (360-412)||(2773223-2773275)
chr6 (83-155)||(28894544-28894611)
chr6 (83-173)||(3826863-3826948)
chr6 (83-173)||(14969699-14969784)
chr6 (82-155)||(22920516-22920584)
chr6 (382-413)||(16731599-16731630)
chr6 (69-155)||(2331256-2331337)
chr6 (359-413)||(11183897-11183951)
chr6 (359-413)||(16883806-16883860)
chr6 (126-179)||(6856609-6856662)
chr6 (69-173)||(17231830-17231929)
[»] chr2 (15 HSPs)
chr2 (69-413)||(30719749-30720076)
chr2 (69-173)||(1506682-1506781)
chr2 (69-173)||(29435725-29435824)
chr2 (264-399)||(13572118-13572254)
chr2 (69-173)||(1503478-1503577)
chr2 (69-173)||(4577799-4577898)
chr2 (71-184)||(18938870-18938978)
chr2 (82-155)||(38316110-38316178)
chr2 (69-173)||(15704015-15704114)
chr2 (69-173)||(15719319-15719418)
chr2 (84-179)||(40677811-40677901)
chr2 (83-173)||(11056330-11056415)
chr2 (83-173)||(11059788-11059873)
chr2 (71-155)||(22592490-22592569)
chr2 (85-173)||(13518294-13518377)
[»] chr7 (35 HSPs)
chr7 (69-413)||(22083260-22083587)
chr7 (17-184)||(26808764-26808925)
chr7 (74-196)||(6214397-6214514)
chr7 (69-185)||(16546977-16547088)
chr7 (69-185)||(16618574-16618685)
chr7 (332-410)||(17152177-17152256)
chr7 (83-173)||(8257876-8257961)
chr7 (83-173)||(23467213-23467298)
chr7 (83-177)||(43549181-43549270)
chr7 (22-185)||(3541201-3541358)
chr7 (196-256)||(6214350-6214410)
chr7 (336-379)||(5742-5785)
chr7 (258-352)||(6214180-6214275)
chr7 (83-173)||(20100632-20100717)
chr7 (71-184)||(2251847-2251955)
chr7 (71-184)||(26460441-26460549)
chr7 (83-155)||(8257650-8257717)
chr7 (332-407)||(16547225-16547301)
chr7 (332-407)||(16618361-16618437)
chr7 (71-155)||(23598826-23598905)
chr7 (83-173)||(748086-748171)
chr7 (83-173)||(2349447-2349532)
chr7 (83-173)||(5826753-5826838)
chr7 (83-173)||(8397833-8397918)
chr7 (83-173)||(11825400-11825485)
chr7 (83-173)||(22232672-22232757)
chr7 (83-173)||(22253982-22254067)
chr7 (83-173)||(22257246-22257331)
chr7 (82-184)||(26182289-26182386)
chr7 (83-155)||(6964275-6964342)
chr7 (82-185)||(26153138-26153236)
chr7 (83-125)||(710105-710147)
chr7 (17-62)||(17601607-17601653)
chr7 (359-413)||(23313321-23313375)
chr7 (83-119)||(38431381-38431417)
[»] chr5 (22 HSPs)
chr5 (17-184)||(35432524-35432686)
chr5 (207-410)||(17944715-17944919)
chr5 (69-173)||(2453257-2453356)
chr5 (69-173)||(19686144-19686243)
chr5 (69-173)||(19689527-19689626)
chr5 (69-173)||(34652800-34652899)
chr5 (69-164)||(17944625-17944715)
chr5 (69-179)||(9690737-9690842)
chr5 (83-185)||(33320957-33321054)
chr5 (69-173)||(3195068-3195167)
chr5 (22-179)||(26337911-26338062)
chr5 (71-173)||(26548070-26548167)
chr5 (71-173)||(26551629-26551726)
chr5 (83-173)||(28562404-28562489)
chr5 (83-173)||(28565972-28566057)
chr5 (337-407)||(9690989-9691060)
chr5 (83-173)||(40799961-40800046)
chr5 (126-179)||(1810471-1810524)
chr5 (83-155)||(4731894-4731961)
chr5 (354-413)||(33320739-33320798)
chr5 (71-125)||(26726922-26726976)
chr5 (332-413)||(35432299-35432381)
[»] scaffold0134 (1 HSPs)
scaffold0134 (69-411)||(7212-7536)
[»] chr1 (24 HSPs)
chr1 (332-413)||(49148000-49148082)
chr1 (332-409)||(3087568-3087648)
chr1 (82-185)||(33898313-33898411)
chr1 (74-185)||(50196992-50197098)
chr1 (359-413)||(22448010-22448064)
chr1 (359-413)||(22453244-22453298)
chr1 (83-173)||(17902833-17902918)
chr1 (359-413)||(22456554-22456608)
chr1 (83-173)||(37641856-37641941)
chr1 (69-173)||(49716347-49716446)
chr1 (69-173)||(49719829-49719928)
chr1 (82-184)||(16838968-16839065)
chr1 (82-184)||(16848898-16848995)
chr1 (83-173)||(28918363-28918448)
chr1 (336-413)||(34066452-34066529)
chr1 (359-411)||(8435366-8435418)
chr1 (83-155)||(34552747-34552814)
chr1 (82-185)||(3087758-3087856)
chr1 (83-155)||(6205868-6205936)
chr1 (83-130)||(20981348-20981395)
chr1 (84-179)||(23441323-23441413)
chr1 (331-372)||(21153358-21153399)
chr1 (71-184)||(24200278-24200386)
chr1 (83-155)||(18392381-18392447)
[»] scaffold0043 (3 HSPs)
scaffold0043 (332-413)||(13814-13896)
scaffold0043 (332-413)||(11471-11553)
scaffold0043 (22-185)||(13520-13677)
[»] scaffold0045 (1 HSPs)
scaffold0045 (332-411)||(90360-90440)
[»] scaffold0007 (1 HSPs)
scaffold0007 (85-185)||(92423-92518)
[»] scaffold0401 (2 HSPs)
scaffold0401 (22-178)||(4187-4337)
scaffold0401 (332-413)||(4481-4563)
[»] scaffold0083 (2 HSPs)
scaffold0083 (332-413)||(42823-42905)
scaffold0083 (22-155)||(29250-29377)
[»] scaffold0067 (1 HSPs)
scaffold0067 (71-125)||(27338-27392)
[»] scaffold0360 (1 HSPs)
scaffold0360 (84-173)||(2443-2527)
[»] scaffold1048 (1 HSPs)
scaffold1048 (69-125)||(1376-1432)
[»] scaffold0273 (1 HSPs)
scaffold0273 (83-155)||(19819-19886)
[»] scaffold0214 (3 HSPs)
scaffold0214 (69-173)||(13581-13679)
scaffold0214 (69-173)||(27597-27695)
scaffold0214 (83-165)||(20044-20121)
[»] scaffold0062 (2 HSPs)
scaffold0062 (69-173)||(52927-53026)
scaffold0062 (69-173)||(67876-67975)
[»] scaffold0175 (1 HSPs)
scaffold0175 (65-125)||(28747-28807)
[»] scaffold0014 (1 HSPs)
scaffold0014 (126-173)||(228660-228707)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 7395062 - 7394690
Alignment:
Q  21 actagagataggaagttgagagttaagacttaggattaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||||||     
T  7395062 actagagataggaagttgagagttaagacttaggattaacgagctagaacatcacttccaaagttaatcaatcggtttaagagattaaaaggttataac- 7394964  T
Q  121 taggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaagcctgaaattacaggctgaaattacattgagaacata 220  Q
         || || |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||             |||||||||||||||||||||||    
T  7394963 -----taagatagggctttgagtcaagagattgatcaaagctaataagttaatccgtcggaaag-------------gctgaaattacattgagaacata 7394882  T
Q  221 gagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccattttttatttacttgcaatttatta 320  Q
    ||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7394881 gagaatctagctaccaaagtgaccaatagaggattcaaaagctgaatcatctgtttttcatataatctccaaccattttttatttacttgcaatttatta 7394782  T
Q  321 ttttcagc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    |||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7394781 tttttatcatttaatccaactgcctagggcaaccataattttaacacatccttaattttaatgtctttgctgagtagaaattgaaacagtcc 7394690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 76 - 411
Target Start/End: Complemental strand, 24605384 - 24605067
Alignment:
Q  76 ttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatcc 175  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||     ||||||||| ||||| ||||| ||||||| || ||||||||||||||||    
T  24605384 ttccaaagttattcaatcggtttaagagattaaaaggttataacct-----aggaaagggctttgattcaagagattgatcaatgctaataagttaatcc 24605290  T
Q  176 gtcggaaagcctgaaattacaggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtt 275  Q
    ||||             || ||| || | ||||||||||||| |||||||  | ||||||| || |||||||||||||||  ||||| ||||||||||||    
T  24605289 gtcg-------------taaaggttggatttacattgagaacttagagaatttagctaccatagagaccaatagaggattagaaagcataatcatctgtt 24605203  T
Q  276 tttcatataatc-tccaaccattttttatttacttgcaatttatta-ttttcagc-tttaatccaactgcctagggcaacaataattttaacacatcctt 372  Q
    || ||||||||| ||||||||   ||||||| |||||||||||||| ||||| ||  | ||  |||||||||| |||| || | | ||||| ||||||||    
T  24605202 ttccatataatcttccaacca--gtttattttcttgcaatttattatttttctgcaatcaactcaactgccta-ggcaccattgaatttaatacatcctt 24605106  T
Q  373 aattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
     |||||||||| |||||  ||||||||||||||||||||    
T  24605105 tattttaacgtttttgccaagtagaaattgaaacagtcc 24605067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 19928868 - 19928964
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaa 182  Q
    |||||||||||||||||||||||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| | | | ||||||||||||| ||    
T  19928868 gttattcaatcggtttaagatattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaaccacttagttaatccgtcgtaa 19928962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 13979122 - 13979219
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaa 182  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| | | | ||||||||||||| ||    
T  13979122 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaaccacttagttaatccgtcgtaa 13979216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 23653249 - 23653348
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||| |||||||  |||||||||||||||||||| ||||||||||||||||      |||||||||||||||||||||   |||||| ||| ||||| ||    
T  23653249 acatagcttccacggttattcaatcggtttaagagattaaaatgttataac-----ttaggaaagggttttgagtcaaaaaattgatcaaaactaattag 23653343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 26703361 - 26703309
Alignment:
Q  354 ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaac 406  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  26703361 ataattttaacacatccttaattttaacgtccttgccaagtagaaattgaaac 26703309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 26703681 - 26703524
Alignment:
Q  22 ctagagataggaagttgagagttaagactta-ggattaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacc 120  Q
    ||||||||| ||| |||||||||| |||||| |||||||||  ||  | ||| ||||||  ||||||||||||||||||||| ||||||| ||||||||     
T  26703681 ctagagataagaaattgagagttatgacttatggattaacgttctc-accat-gcttccgcagttattcaatcggtttaagagattaaaaggttataac- 26703585  T
Q  121 taggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaagc 185  Q
         |||||||| ||||||||||||| ||||||| ||| | | | ||||||||||||| |||||    
T  26703584 ----ttaggaaagagttttgagtcaagagattgatcaaaaccacttagttaatccgtcgtaaagc 26703524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 18859767 - 18859852
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  18859767 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 18859852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 49636666 - 49636558
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||    
T  49636666 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgatcaaaaccaatttgtt 49636572  T
Q  171 aatccgtcggaaag 184  Q
    ||| ||||| ||||    
T  49636571 aattcgtcgtaaag 49636558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 11702731 - 11702632
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   ||||||||||| |||||||| ||||||| ||| ||||      |||||||||||||||||||||| ||||||| ||| ||||| ||    
T  11702731 acatcgcttccgcggttattcaatcagtttaagagattaaaaggttttaac-----ttaggaaagggttttgagtcaagagattgatcaaaactaattag 11702637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 411
Target Start/End: Original strand, 37176859 - 37176939
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    |||||||||| ||||||||||  |||| ||||| |||||||| ||||||| |  ||||| |||||||||||||||||||||    
T  37176859 aatccaactgtctagggcaacccataaatttaatacatcctttattttaaagcttttgccgagtagaaattgaaacagtcc 37176939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 14701879 - 14701961
Alignment:
Q  68 aacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    ||||||||||||   |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| |||||||    
T  14701879 aacatcgcttccgcggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgat 14701961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 3719638 - 3719584
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctagga 125  Q
    |||||||||  ||||||||||||||||||||| ||||||| |||||||| |||||    
T  3719638 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataacttagga 3719584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 11560737 - 11560775
Alignment:
Q  17 tgaaactagagataggaagttgagagttaagacttagga 55  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  11560737 tgaaactagagataggaagttgcgagttatgacttagga 11560775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 37176700 - 37176746
Alignment:
Q  132 agggttttgagtcaagggattgattaaagctaataagttaatccgtc 178  Q
    ||||| |||||||| | ||||||||||| ||||||||||||||||||    
T  37176700 agggtcttgagtcatgagattgattaaaactaataagttaatccgtc 37176746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 10385963 - 10386007
Alignment:
Q  129 gaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    ||||||||||||||||||| ||||||| ||| ||||| |||||||    
T  10385963 gaaagggttttgagtcaagagattgatcaaaactaattagttaat 10386007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 17670309 - 17670368
Alignment:
Q  91 atcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    ||||||||||||||||||||  |||||||      |||||||||||||||||||||| |||||||    
T  17670309 atcggtttaagatattaaaagattataac-----ttaggaaagggttttgagtcaagagattgat 17670368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 411
Target Start/End: Original strand, 587238 - 587612
Alignment:
Q  19 aaactagagataggaagttgagagttaagacttaggattaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataa 118  Q
    |||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||||| ||||||| ||||||| |||||||    
T  587238 aaactagagataggaagttgagagttaagacttagggtttacgaactagaacatcgcttcaaaagttattcaatcgatttaagagattaaaaggttataa 587337  T
Q  119 cctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaagcctgaaattacaggctgaaattacattgagaaca 218  Q
    |||||||     ||||| ||||||||||| ||||||| |||||||||||||||||||||||||||   |||          |||||||||||||||||||    
T  587338 cctagga-----aagggctttgagtcaagagattgatcaaagctaataagttaatccgtcggaaa---tga----------tgaaattacattgagaaca 587419  T
Q  219 tagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccattttttatttacttgcaatttat 318  Q
    ||||||| || || |||| ||  || |||||||||||| ||||||| |||||||||||| || ||||| |||||||| |||| |||||||||||||||||    
T  587420 tagagaatctagcaaccatagatacgaatagaggattcgaaagcttgatcatctgttttccacataatttccaaccagtttt-atttacttgcaatttat 587518  T
Q  319 tattttcagct-ttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    |||||| |||  ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  587519 tatttttagcacttaatccaactgcctagggtaaccataattttaacacatccttagttttaacgtctttgtcgagtagaaattgaaacagtcc 587612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 626684 - 626310
Alignment:
Q  19 aaactagagataggaagttgagagttaagacttaggattaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataa 118  Q
    |||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||||| ||||||||||||||| ||||||| ||||||| |||||||    
T  626684 aaactagagataggaagttgagagttaagacttagggtttacgaactagaacatagcttcaaaagttattcaatcgatttaagagattaaaaggttataa 626585  T
Q  119 cctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaagcctgaaattacaggctgaaattacattgagaaca 218  Q
    |||||||     ||||| ||||||||||| ||||||| |||||||||||||||||||||||||||   |||          |||||||||||||||||||    
T  626584 cctagga-----aagggctttgagtcaagagattgatcaaagctaataagttaatccgtcggaaa---tga----------tgaaattacattgagaaca 626503  T
Q  219 tagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccattttttatttacttgcaatttat 318  Q
    ||||||| || || |||| ||  || |||||||||||| ||||||| |||||||||||| || ||||| |||||||| |||| |||||||||||||||||    
T  626502 tagagaatctagcaaccatagatacgaatagaggattcgaaagcttgatcatctgttttccacataatttccaaccagtttt-atttacttgcaatttat 626404  T
Q  319 tattttcagct-ttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    |||||| |||  ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| ||  |||||||||||||||||||||    
T  626403 tatttttagcacttaatccaactgcctagggtaaccataattttaacacatccttagttttaacgtctatgacgagtagaaattgaaacagtcc 626310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 411
Target Start/End: Complemental strand, 12820783 - 12820709
Alignment:
Q  338 actgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    |||||||||||||||  ||||  ||||||||||||| |||||||| ||||||| |||||||||||||||||||||    
T  12820783 actgcctagggcaacccataaacttaacacatcctttattttaacatctttgccgagtagaaattgaaacagtcc 12820709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 27863683 - 27863599
Alignment:
Q  84 ttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    ||||||||||||||||||| ||||||||||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  27863683 ttattcaatcggtttaagagattaaaatgttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactatttagttaat 27863599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 13332077 - 13332144
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||||||||||| ||||||||||||||||      |||||||||||||||||||||| |||||||    
T  13332077 gttattcaatcggtttaagagattaaaatgttataac-----ttaggaaagggttttgagtcaagagattgat 13332144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 30645448 - 30645547
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    ||||||||||||  |||||||||||||||||| | ||||||| |||| |||      |||||||||||||||||||||| ||||||| ||| ||||| ||    
T  30645448 acatcgcttccacggttattcaatcggtttaaaagattaaaaggttagaac-----ttaggaaagggttttgagtcaagagattgatcaaaactaattag 30645542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 14187990 - 14188075
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  14187990 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 14188075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 24435008 - 24435062
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctagga 125  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||||||||    
T  24435008 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataacctagga 24435062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 24445054 - 24445108
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctagga 125  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||||||||    
T  24445054 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataacctagga 24445108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 22654251 - 22654347
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaa 182  Q
    |||||||||||||||||||| ||||||| |||||||  ||||     |||||||||||||||||| ||||||| ||| ||| | ||||||| ||||| ||    
T  22654251 gttattcaatcggtttaagagattaaaaggttataatttagg-----aaagggttttgagtcaagagattgatcaaaactacttagttaattcgtcgtaa 22654345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 5828015 - 5828082
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| |||||||    
T  5828015 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgat 5828082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 411
Target Start/End: Original strand, 5828249 - 5828329
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    |||||||||||||||||||||  |||| |||||  ||||||| |||||||||  ||||  |||||||||||||||||||||    
T  5828249 aatccaactgcctagggcaacccataaatttaatgcatcctttattttaacgcttttgacgagtagaaattgaaacagtcc 5828329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 17013174 - 17013095
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| |||||||    
T  17013174 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgat 17013095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 18696119 - 18696020
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    ||||| |||||  ||||||||||||||||||||| ||||||| ||||||||      ||||||||||||| |||||||| ||||||| ||| ||| | ||    
T  18696119 acatctcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggtttcgagtcaagagattgatcaaaactacttag 18696025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 20262530 - 20262629
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   ||||||||||||| |||||| ||||||| |||||||| || ||     ||||||||||||||||| ||||||| ||| ||||| ||    
T  20262530 acatcgcttccgcggttattcaatcggattaagagattaaaaggttataacttaaga-----aagggttttgagtcaagagattgatcaaaactaattag 20262624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 21049160 - 21049259
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   ||||||||||||| |||||| ||||||| |||||||| || ||     ||||||||||||||||| ||||||| ||| ||||| ||    
T  21049160 acatcgcttccgcggttattcaatcggattaagagattaaaaggttataacttaaga-----aagggttttgagtcaagagattgatcaaaactaattag 21049254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 39660087 - 39660020
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| |||||||    
T  39660087 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgat 39660020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 411
Target Start/End: Complemental strand, 41778880 - 41778805
Alignment:
Q  336 caactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    ||||||||||||||| |  | | ||||| ||||| || |||||||||| ||||| |||||||||||||||||||||    
T  41778880 caactgcctagggcacccttgaatttaatacatcttttattttaacgtttttgccgagtagaaattgaaacagtcc 41778805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 5964245 - 5964330
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      ||||||| |||||||||||||| ||||||| ||| ||| | |||||||    
T  5964245 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaatggttttgagtcaagagattgatcaaatctacttagttaat 5964330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 13097156 - 13097210
Alignment:
Q  359 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||| |||||||| |||||||||| ||||| ||||||||||||||| |||||||    
T  13097156 tttaatacatcctttattttaacgtttttgccgagtagaaattgaaatagtccct 13097210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 17544027 - 17544081
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctagga 125  Q
    |||||||||  ||||||||||||||||||||| ||||||| |||||||| |||||    
T  17544027 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataacttagga 17544081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 24903613 - 24903547
Alignment:
Q  84 ttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    ||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| |||||||    
T  24903613 ttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgat 24903547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 31986302 - 31986349
Alignment:
Q  126 taggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||||| ||||||| ||| ||||| |||||||    
T  31986302 taggaaagggttttgagtcaagagattgatcaaaactaattagttaat 31986349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 25 - 415
Target Start/End: Complemental strand, 36037142 - 36036770
Alignment:
Q  25 gagataggaagttgagagttaagacttaggattaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctagg 124  Q
    ||||||||||||||||| |||||||||||| ||||||| ||| || |||||||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  36037142 gagataggaagttgagacttaagacttagggttaacgaactaaaatatcgcttccaaagttattca-tcggtttaagagattaaaaggttataacctagg 36037044  T
Q  125 ataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaagcctgaaattacaggctgaaattacattgagaacatagaga 224  Q
    |     ||||||||||||||||| ||||||| |||||||||||||||||||||||||||              ||||| |||||||||||||||||||||    
T  36037043 a-----aagggttttgagtcaagagattgatcaaagctaataagttaatccgtcggaaat-------------gctgagattacattgagaacatagaga 36036962  T
Q  225 acctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccattttttatttacttgcaatttattatttt 324  Q
    | || |||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||  |||||||||||||||||||||||||||    
T  36036961 atctagctaccacagagaccaatagaggattcaaaagcttaatcacctgttttccatataatttccaacca-gttttatttacttgcaatttattatttt 36036863  T
Q  325 cagc-tttaatccaactgcctagggcaa-caataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccctat 415  Q
     |||  | |||||||||||||||||||| || | | ||||| ||||  || |||||||||  |||| ||| ||||||||||||||||||||||    
T  36036862 tagcactaaatccaactgcctagggcaaccattgaatttaatacataatttattttaacgcttttgttgaatagaaattgaaacagtccctat 36036770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 18551592 - 18551753
Alignment:
Q  17 tgaaactagagataggaagttgagagttaagactta-ggattaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgtta 115  Q
    |||||||||||||||||||||| |||||| |||||| |||||||||  ||  | ||| |||||||  |||||||||||||||||||| ||||||| ||||    
T  18551592 tgaaactagagataggaagttgcgagttatgacttatggattaacgttctc-accat-gcttccactgttattcaatcggtttaagagattaaaaggtta 18551689  T
Q  116 taacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaag 184  Q
    ||||      ||||||||||||||||| |||| ||||||| ||| | | | ||||||||||||| ||||    
T  18551690 taac-----ttaggaaagggttttgagacaagagattgatcaaaaccacttagttaatccgtcgtaaag 18551753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 4250314 - 4250471
Alignment:
Q  22 ctagagataggaagttgagagttaagacttagga-ttaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacc 120  Q
    ||||||||||||| |||||||||| |||||| || ||||||  ||   |||| |||||||  |||||||||||||||||||| ||||||| ||||||||     
T  4250314 ctagagataggaaattgagagttatgacttatgaattaacgttctg--acatagcttccacggttattcaatcggtttaagagattaaaaggttataac- 4250410  T
Q  121 taggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaagc 185  Q
         | |||||||||||||||||||| ||||||| ||| | | | ||||||||||||| |||||    
T  4250411 ----ttcggaaagggttttgagtcaagagattgatcaaaaccacttagttaatccgtcgtaaagc 4250471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 18883188 - 18883287
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    ||||||||||||  |||||||||| ||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| |||  |||| ||    
T  18883188 acatcgcttccacggttattcaattggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaattaattag 18883282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 9155050 - 9155109
Alignment:
Q  354 ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    |||| ||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  9155050 ataaatttaatacatccttgattttaacgtttttgccgagtagaaattgaaacagtccct 9155109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 9158232 - 9158291
Alignment:
Q  354 ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    |||| ||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  9158232 ataaatttaatacatccttgattttaacgtttttgccgagtagaaattgaaacagtccct 9158291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 20536714 - 20536628
Alignment:
Q  82 agttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  20536714 agttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactatttagttaat 20536628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 2784110 - 2784195
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  2784110 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 2784195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 4225981 - 4225896
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  4225981 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 4225896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 10963384 - 10963481
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    |||||||||  ||||||||||||||||||||| |||||||  |||||||      |||||||||||||||||||||| ||||||| ||| ||| | ||||    
T  10963384 atcgcttccgcagttattcaatcggtttaagagattaaaagattataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagtt 10963478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 10966893 - 10966990
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    |||||||||  ||||||||||||||||||||| |||||||  |||||||      |||||||||||||||||||||| ||||||| ||| ||| | ||||    
T  10966893 atcgcttccgcagttattcaatcggtttaagagattaaaagattataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagtt 10966987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 30158157 - 30158072
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  30158157 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaatctacttagttaat 30158072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 5887125 - 5887017
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||    
T  5887125 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgatcaaaaccaatttgtt 5887031  T
Q  171 aatccgtcggaaag 184  Q
    ||| ||||| ||||    
T  5887030 aattcgtcgtaaag 5887017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 5897109 - 5897001
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||    
T  5897109 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgatcaaaaccaatttgtt 5897015  T
Q  171 aatccgtcggaaag 184  Q
    ||| ||||| ||||    
T  5897014 aattcgtcgtaaag 5897001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 18515870 - 18515762
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||    
T  18515870 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgataaaaaccaatttgtt 18515776  T
Q  171 aatccgtcggaaag 184  Q
    ||| ||||| ||||    
T  18515775 aattcgtcgtaaag 18515762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 2279762 - 2279663
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||      |||||||||||||||| ||||| ||||||| ||| ||| | ||    
T  2279762 acatcgcttccgcagttattcaatcggtttaagagattaaagggttataac-----ttaggaaagggttttgattcaagagattgatcaaaactacttag 2279668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 9154790 - 9154881
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaat 165  Q
    |||||||||| |  |||||||||||||||||||| ||||||| ||||||||      ||||||||| |||||||||||| ||||||| ||| |||||    
T  9154790 acatcgcttcaacggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaaggattttgagtcaagagattgatcaaaactaat 9154881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 10959877 - 10959956
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||  ||||||||||||||||||||| |||||||  |||||||      |||||||||||||||||||||| |||||||    
T  10959877 atcgcttccgcagttattcaatcggtttaagagattaaaagattataac-----ttaggaaagggttttgagtcaagagattgat 10959956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 411
Target Start/End: Original strand, 18551888 - 18551968
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    |||| |||||||||| |||||  |||| |||||||||||||||||||||| ||||||||   ||||||||| |||||||||    
T  18551888 aatctaactgcctagagcaacccataaatttaacacatccttaattttaatgtctttgccttgtagaaattaaaacagtcc 18551968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 19868971 - 19869061
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtc 178  Q
    |||||||||| ||||||||| ||||||| |||||||| |||||     ||| ||||||||||||| ||||||| ||| ||| | ||||||||||||    
T  19868971 gttattcaattggtttaagagattaaaaagttataacttagga-----aagagttttgagtcaagagattgatcaaaactatttagttaatccgtc 19869061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 179
Target Start/End: Original strand, 28327433 - 28327523
Alignment:
Q  84 ttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcg 179  Q
    ||||||||||||||||||| ||||||| ||||||||      ||||||||||||||| |||||| ||||||| ||| | | | |||||||||||||    
T  28327433 ttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgtgtcaagagattgatcaaaaccacttagttaatccgtcg 28327523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 179
Target Start/End: Original strand, 28330758 - 28330848
Alignment:
Q  84 ttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcg 179  Q
    ||||||||||||||||||| ||||||| ||||||||      ||||||||||||||| |||||| ||||||| ||| | | | |||||||||||||    
T  28330758 ttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgtgtcaagagattgatcaaaaccacttagttaatccgtcg 28330848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 6173495 - 6173414
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||   |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| |||||||    
T  6173495 acatcgcttccgcggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgat 6173414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 16314718 - 16314672
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggatagg 129  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||||    
T  16314718 gttattcaatcggtttaagagattaaaaggttataacttaggatagg 16314672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 18495712 - 18495666
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggatagg 129  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||||    
T  18495712 gttattcaatcggtttaagagattaaaaggttataacttaggatagg 18495666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 23374859 - 23374762
Alignment:
Q  82 agttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcgga 181  Q
    ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||||| ||||| |    
T  23374859 agttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgatcaaaaccaatttgttaattcgtcgta 23374765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 25888598 - 25888513
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      ||||||| |||||||||||||| ||||||| ||| ||| | |||||||    
T  25888598 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaatggttttgagtcaagagattgatcaaaactacttagttaat 25888513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 42354541 - 42354456
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||| |||| || ||     ||||||||||||||||| ||||||| ||| ||||| |||||||    
T  42354541 gttattcaatcggtttaagagattaaaaggttttaacttaaga-----aagggttttgagtcaagagattgatcaaaactaattagttaat 42354456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 16414884 - 16414788
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaa 182  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||||| ||||| ||    
T  16414884 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgataaaaaccaatttgttaattcgtcgtaa 16414790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 54736259 - 54736181
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaat 165  Q
    |||||||||||||||||||| ||||||| |||||||| |||||    || || |||||||||||| ||||||| ||| |||||    
T  54736259 gttattcaatcggtttaagagattaaaaggttataacttagga----aagggtttttgagtcaagagattgatcaaaactaat 54736181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 27054859 - 27054927
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||||||||||| ||||||| |||||||| |||||    || || |||||||||||| |||||||    
T  27054859 gttattcaatcggtttaagagattaaaaggttataacttagga----aagggtttttgagtcaagagattgat 27054927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 9157977 - 9158062
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    ||||||||||| |||||||| ||||||| |||||||  || ||     ||||||||||||||||| ||||||| ||| ||||| |||||||    
T  9157977 gttattcaatcagtttaagagattaaaaggttataaattaaga-----aagggttttgagtcaagagattgatcaaaactaattagttaat 9158062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 20189626 - 20189251
Alignment:
Q  17 tgaaactagagataggaagttgagagttaagacttaggattaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttat 116  Q
    |||||||| ||||||||| |||| ||||| |||||||| || |||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    
T  20189626 tgaaactacagataggaaattgatagttatgacttagggttgacgaactagaacattgcttccaaagttattcaatcggtttaagagattaaaaggttat 20189527  T
Q  117 aacctaggataggaaagggttttgagtcaagggattgattaaagctaataa-gttaatccgtcggaaagcctgaaattacaggctgaaattacattgaga 215  Q
    |||||||||     ||| | ||||||||||| ||||||| ||||||| ||| ||||||||||||||||              |||||||||||||| |||    
T  20189526 aacctagga-----aagtgatttgagtcaagtgattgatcaaagctattaaagttaatccgtcggaaat-------------gctgaaattacatttaga 20189445  T
Q  216 acatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccattttttatttacttgcaatt 315  Q
    |||||||||| || |||||||||| |||||||||||||||| ||  ||||||||||| |||| |||||||| ||||||||  ||||||||||||||||||    
T  20189444 acatagagaatctagctaccacagagaccaatagaggattcgaatacttaatcatctattttccatataatttccaacca-gttttatttacttgcaatt 20189346  T
Q  316 tattattttcagc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagt 409  Q
    ||||||||| |||  |||| ||||||| |||||| ||| | ||||||||||||||||| ||||||||   ||||  ||||| |||||||||||||    
T  20189345 tattatttttagcacttaacccaactgtctagggaaaccacaattttaacacatcctttattttaactcttttgtggagtataaattgaaacagt 20189251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 22146365 - 22146740
Alignment:
Q  17 tgaaactagagataggaagttgagagttaagacttaggattaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttat 116  Q
    |||||||| ||||||||| |||| ||||| |||||||| || |||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    
T  22146365 tgaaactacagataggaaattgatagttatgacttagggttgacgaactagaacattgcttccaaagttattcaatcggtttaagagattaaaaggttat 22146464  T
Q  117 aacctaggataggaaagggttttgagtcaagggattgattaaagctaataa-gttaatccgtcggaaagcctgaaattacaggctgaaattacattgaga 215  Q
    |||||||||     ||| | ||||||||||| ||||||| ||||||| ||| ||||||||||||||||              |||||||||||||| |||    
T  22146465 aacctagga-----aagtgatttgagtcaagtgattgatcaaagctattaaagttaatccgtcggaaat-------------gctgaaattacatttaga 22146546  T
Q  216 acatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccattttttatttacttgcaatt 315  Q
    |||||||||| || |||||||||| |||||||||||||||| ||  ||||||||||| |||| |||||||| ||||||||  ||||||||||||||||||    
T  22146547 acatagagaatctagctaccacagagaccaatagaggattcgaatacttaatcatctattttccatataatttccaacca-gttttatttacttgcaatt 22146645  T
Q  316 tattattttcagc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagt 409  Q
    ||||||||| |||  |||| ||||||| |||||| ||| | ||||||||||||||||| ||||||||   ||||  ||||| |||||||||||||    
T  22146646 tattatttttagcacttaacccaactgtctagggaaaccacaattttaacacatcctttattttaactcttttgtggagtataaattgaaacagt 22146740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 210 - 363
Target Start/End: Original strand, 16731443 - 16731597
Alignment:
Q  210 ttgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccattttttatttactt 309  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16731443 ttgagaacctagagaatctagctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaacaattttttatttactt 16731542  T
Q  310 gcaatttattattttcagc-tttaatccaactgcctagggcaacaataattttaa 363  Q
    |||||||||||||||  || |||||| |||| |||||||||||| |||| |||||    
T  16731543 gcaatttattatttttcgcatttaatacaacagcctagggcaaccataactttaa 16731597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 16731296 - 16731444
Alignment:
Q  17 tgaaactagagataggaagttgagagttaagacttaggattaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  16731296 tgaaactagagataggaagttgagagttaagacttaggattaacgagctagaacatcgcttccaaagttattcaatcggcttaagagattaaaaggttat 16731395  T
Q  117 aacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    ||||||||| ||||      ||||||||||| ||||||| ||||||||||||||    
T  16731396 aacctaggaaaggac-----tttgagtcaagagattgatcaaagctaataagtt 16731444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 69 - 411
Target Start/End: Complemental strand, 9313929 - 9313605
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||||||||      |||||||||||||||||||||| ||||||| ||||||||||||    
T  9313929 acatcgcttccgcagttattcaatcggtttaagatattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaagctaataag 9313835  T
Q  169 ttaatccgtcggaaagcctgaaattacaggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatc 268  Q
    ||||||| ||              || |||||||| ||||||||||||  |||||||  | |||||||||| |||||||||||||||| |||||||||||    
T  9313834 ttaatccttc-------------ctaaaggctgaatttacattgagaatttagagaatttagctaccacagagaccaatagaggattcgaaagcttaatc 9313748  T
Q  269 atctgtttttcatataatc-tccaaccattttttatttacttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaaca 365  Q
    || |||||| ||||| ||| ||||||||   |||||||||||||||||||||||||| | ||  | ||  ||||||||||||||  || | | ||||| |    
T  9313747 atatgttttccatattatcttccaacca--atttatttacttgcaatttattatttttatgcaatcaactcaactgcctagggc-ccattgaatttaata 9313651  T
Q  366 catccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
     |||||| |||||||||  |||||||||||||||||||||||||||    
T  9313650 tatcctttattttaacgcttttgctgagtagaaattgaaacagtcc 9313605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 83 - 413
Target Start/End: Original strand, 28117828 - 28118134
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaa 182  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| |||||||||||||||||||||||       
T  28117828 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaagctaataagttaatccgtcg--- 28117919  T
Q  183 agcctgaaattacaggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcata 282  Q
              || |||||||| ||||||||||||| |||||||  | |||||||||| |||||       |||| |||||||||||||||||||| ||||    
T  28117920 ----------taaaggctgaatttacattgagaacttagagaatttagctaccacagagacca-------attcgaaagcttaatcatctgttttccata 28118002  T
Q  283 taatc-tccaaccattttttatttacttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaacacatccttaatttta 379  Q
    | ||| ||||||||   |||||||||||||||||||||||||| | ||  | ||  ||||||||||||||| || | | ||||| | |||||| ||||||    
T  28118003 ttatcttccaacca--gtttatttacttgcaatttattatttttatgcaatcaactcaactgcctagggcaccattgaatttaatatatcctttatttta 28118100  T
Q  380 acgtctttgctgagtagaaattgaaacagtccct 413  Q
    |||  ||||| |||||||||||||||||||||||    
T  28118101 acgcttttgccgagtagaaattgaaacagtccct 28118134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 332 - 411
Target Start/End: Complemental strand, 12980636 - 12980556
Alignment:
Q  332 aatccaactgcctagggcaacaata-attttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    |||||||||||||||||||||  || | ||||| |||||||| |||||||||| |||||||||||||||||||||||||||    
T  12980636 aatccaactgcctagggcaactttagaatttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtcc 12980556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 413
Target Start/End: Complemental strand, 12983523 - 12983441
Alignment:
Q  332 aatccaactgcctagggcaacaata-attttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    |||||||||||||||||||||| |  | ||||| |||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  12983523 aatccaactgcctagggcaacatttgaatttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagcccct 12983441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 411
Target Start/End: Original strand, 12747031 - 12747111
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    |||||||||||||||||||||  |||| ||||| |||||||| |||||||||  ||||| |||||||||||||||||||||    
T  12747031 aatccaactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtcc 12747111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 411
Target Start/End: Complemental strand, 28894377 - 28894297
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    |||| ||||||||||||||||  |||| ||||| |||||||| |||||||||| ||||| |||||||||||||||||||||    
T  28894377 aatctaactgcctagggcaacccataaatttaatacatcctttattttaacgtttttgccgagtagaaattgaaacagtcc 28894297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 34502317 - 34502416
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||||| ||    
T  34502317 acatcgcttccgcggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactaattag 34502411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 413
Target Start/End: Complemental strand, 15578814 - 15578732
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    |||||||||||||||||||||  |||| ||||| |||||||| |||||||||  ||||| ||||||||||||||| |||||||    
T  15578814 aatccaactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaatagtccct 15578732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 7560370 - 7560238
Alignment:
Q  17 tgaaactagagataggaagttgagagttaagacttagg-attaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgtta 115  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||  | |  ||| | ||||||  ||||||||||||||||||||| ||||||| ||||    
T  7560370 tgaaactagagataggaagttgcgagttatgacttaggaattaac--gttcaaacctggcttccgcagttattcaatcggtttaagagattaaaaggtta 7560273  T
Q  116 taacctaggataggaaagggttttgagtcaagggattgat 155  Q
         |||  |||||||| ||||||||||||| |||||||    
T  7560272 -----tagcttaggaaagagttttgagtcaagagattgat 7560238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 12746729 - 12746894
Alignment:
Q  17 tgaaactagagataggaagttgagagttaagacttagga-ttaacgagctagaacatcgcttccaaagttattcaatcggtt---taagatattaaaatg 112  Q
    |||| ||||||||||||| |||||||||| |||||| || ||||||  ||   |||| |||||||  |||||||||||||||   ||||| ||||||| |    
T  12746729 tgaacctagagataggaaattgagagttatgacttatgaattaacgttctg--acatagcttccacggttattcaatcggtttaataagagattaaaagg 12746826  T
Q  113 ttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaagc 185  Q
    |||||||      |||||||||||||||||||||| ||||||| ||| | | | ||||||||||||| |||||    
T  12746827 ttataac-----ttaggaaagggttttgagtcaagagattgatcaaaaccacttagttaatccgtcgtaaagc 12746894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 33679320 - 33679222
Alignment:
Q  82 agttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcgga 181  Q
    ||||||||||||||||||||| ||||||||||||||||      || ||||||||||||||| ||| ||||||| ||| | | | ||||||||||||| |    
T  33679320 agttattcaatcggtttaagagattaaaatgttataac-----ttacgaaagggttttgagttaagagattgatcaaaaccacttagttaatccgtcgta 33679226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 5618347 - 5618262
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||| ||| ||||||| ||| ||||| |||||||    
T  5618347 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtgaagagattgatcaaaactaattagttaat 5618262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 11410739 - 11410820
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||   |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| |||||||    
T  11410739 acatcgcttccgcggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgat 11410820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 14966219 - 14966304
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| |||||||||     |||||||||| ||||||||||| ||||||| ||| ||| | |||||||    
T  14966219 gttattcaatcggtttaagagattaaaaggttataacc-----taggaaaggggtttgagtcaagagattgatcaaatctacttagttaat 14966304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 15579045 - 15578948
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaa 182  Q
    |||||||||||||||||||| |||||||  |||||||      |||||||||||||||||||||| ||||||| ||| | | | ||||||||||||| ||    
T  15579045 gttattcaatcggtttaagagattaaaagattataac-----ttaggaaagggttttgagtcaagagattgatcaaaaccacttagttaatccgtcgaaa 15578951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 31123421 - 31123506
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||| ||| ||||||| ||| ||||| |||||||    
T  31123421 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagttaagagattgatcaaaactaattagttaat 31123506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 35027263 - 35027166
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaa 182  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| | | | |||||||| |||| ||    
T  35027263 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaaccacttagttaatctgtcgtaa 35027169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 2773275 - 2773223
Alignment:
Q  360 ttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccc 412  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||    
T  2773275 ttaacacatcctttattttaacatctttgccgagtagaaattgaaacaatccc 2773223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 28894611 - 28894544
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||| ||||||||| ||||||||||||||||      |||||||||||||||||||||| |||||||    
T  28894611 gttattcaattggtttaagagattaaaatgttataac-----ttaggaaagggttttgagtcaagagattgat 28894544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 3826948 - 3826863
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| |||||||  |||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  3826948 gttattcaatcggtttaagagattaaaagattataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 3826863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 14969699 - 14969784
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| |||||||||     || |||||| |||||||||||| ||||||| ||| ||| | |||||||    
T  14969699 gttattcaatcggtttaagagattaaaaggttataacc-----tatgaaaggattttgagtcaagagattgatcaaatctacttagttaat 14969784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 22920516 - 22920584
Alignment:
Q  82 agttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| |||||||    
T  22920516 agttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgat 22920584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 413
Target Start/End: Original strand, 16731599 - 16731630
Alignment:
Q  382 gtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||||||||||||||||||||||||||||||    
T  16731599 gtctttgctgagtagaaattgaaacagtccct 16731630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 2331256 - 2331337
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||| ||||||  ||||||||||||| ||||||| ||||||| ||||||||      ||||||| |||||||||||||| |||||||    
T  2331256 acatagcttccgcagttattcaatcgatttaagagattaaaaggttataac-----ttaggaaatggttttgagtcaagagattgat 2331337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 11183951 - 11183897
Alignment:
Q  359 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||| |||||||| |||||||||| ||| |  ||||||||||||||||||||||    
T  11183951 tttaatacatcctttattttaacgttttttccaagtagaaattgaaacagtccct 11183897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 16883806 - 16883860
Alignment:
Q  359 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||| |||||||| |||||||||  ||| | |||||||||||||||||||||||    
T  16883806 tttaatacatcctttattttaacgcttttaccgagtagaaattgaaacagtccct 16883860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 6856609 - 6856662
Alignment:
Q  126 taggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcg 179  Q
    |||||||||||||||| ||||| ||||||| |||  || |||||||||||||||    
T  6856609 taggaaagggttttgaatcaagagattgatcaaaattattaagttaatccgtcg 6856662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 17231830 - 17231929
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   ||||||||||  |||||||| ||||||| ||||| ||      |||||||||||||||||||||| ||||||| ||| ||| | ||    
T  17231830 acatcgcttccgcggttattcaattagtttaagagattaaaaggttatgac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttag 17231924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 69 - 413
Target Start/End: Original strand, 30719749 - 30720076
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| |||||||||||||||| |||||     ||||||||||||||||| ||||||| ||||||||||||    
T  30719749 acatcgcttccgcggttattcaatcggtttaagagattaaaatgttataacttagga-----aagggttttgagtcaagagattgatcaaagctaataag 30719843  T
Q  169 ttaatccgtcggaaagcctgaaattacaggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatc 268  Q
    ||||| ||||| ||||             |||||| ||||||||||||| |||||||  | |||||||||| |||||||||||||||| |||||||||||    
T  30719844 ttaatacgtcgtaaag-------------gctgaatttacattgagaacttagagaatttagctaccacagagaccaatagaggattcgaaagcttaatc 30719930  T
Q  269 atctgtttttcatataatc-tccaaccattttttatttacttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaaca 365  Q
    ||||||||| ||||| ||| ||||||||   ||||||||||| |||||||||||||| | ||  | ||  |||||||||| |||| || | | ||||| |    
T  30719931 atctgttttccatattatcttccaacca--gtttatttactttcaatttattatttttatgcaatcaactcaactgcctaaggcaccattgaatttaata 30720028  T
Q  366 catccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
     |||||| |||||||||  ||||| |||||||||||||||||| ||||    
T  30720029 tatcctttattttaacgcttttgccgagtagaaattgaaacagcccct 30720076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 1506781 - 1506682
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| ||||||||||| ||||      |||||||||||||||||||||| ||||||| ||| ||||| ||    
T  1506781 acatcgcttccgcggttattcaatcggtttaagagattaaaatgttttaac-----ttaggaaagggttttgagtcaagagattgatcaaaactaattag 1506687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 29435725 - 29435824
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| ||||||||||||||||      |||||||||||||||||||||| ||||||| ||| ||| | ||    
T  29435725 acatcgcttccgcggttattcaatcggtttaagagattaaaatgttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttag 29435819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 399
Target Start/End: Complemental strand, 13572254 - 13572118
Alignment:
Q  264 taatcatctgtttttcatataatctccaaccattttttatttacttgcaatttattattttcagc-tttaatccaactgcctagggcaa-caataatttt 361  Q
    ||||||||| |||| || ||||| |||||||| |||| ||||||||||||||||||||||| |||   |||||||||||||||| |||| | |||| ||     
T  13572254 taatcatctcttttccacataatttccaaccagtttt-atttacttgcaatttattatttttagcacctaatccaactgcctagtgcaacccataaattc 13572156  T
Q  362 aacacatccttaattttaacgtctttgctgagtagaaa 399  Q
    |  |||||||| |||||||||  |||||| ||||||||    
T  13572155 actacatcctttattttaacgaatttgctaagtagaaa 13572118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 1503577 - 1503478
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| ||||||| ||| ||||      |||||||||||||||||||||| ||||||| ||| ||||| ||    
T  1503577 acatcgcttccgcggttattcaatcggtttaagagattaaaaggttttaac-----ttaggaaagggttttgagtcaagagattgatcaaaactaattag 1503483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 4577799 - 4577898
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| |||| || ||||||||      |||||||||||||||||||||| ||||||| ||| ||||| ||    
T  4577799 acatcgcttccgcggttattcaatcggtttaagagattataaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactaattag 4577893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 18938870 - 18938978
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||    
T  18938870 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgatcaaaaccaatttgtt 18938964  T
Q  171 aatccgtcggaaag 184  Q
    ||| ||||| ||||    
T  18938965 aattcgtcgtaaag 18938978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 38316178 - 38316110
Alignment:
Q  82 agttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    ||||||||||||||||||||||||||||| ||||||||      |||||||||||||||||| ||| |||||||    
T  38316178 agttattcaatcggtttaagatattaaaaggttataac-----ttaggaaagggttttgagtgaagagattgat 38316110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 15704114 - 15704015
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    ||||| |||||  ||||||||||||||||||||| ||||||| ||||||||      ||||||||||||| |||||||| ||||||| ||| ||| | ||    
T  15704114 acatctcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggtttcgagtcaagagattgatcaaaactacttag 15704020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 15719418 - 15719319
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||  |||||||||||||||| |||| ||||||| ||||||||      ||||||||||||| |||||||| ||||||| ||| ||| | ||    
T  15719418 acatcgcttccgcagttattcaatcggttgaagagattaaaaggttataac-----ttaggaaagggtttcgagtcaagagattgatcaaaactacttag 15719324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 40677901 - 40677811
Alignment:
Q  84 ttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcg 179  Q
    ||||||||||||||||||| ||||||| ||||||||      ||||||||||||||| |||||| ||||||| ||| | | | |||||||||||||    
T  40677901 ttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgtgtcaagagattgatcaaaaccacttagttaatccgtcg 40677811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 11056330 - 11056415
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||| ||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  11056330 gttattcaatcgatttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 11056415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 11059788 - 11059873
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||| ||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  11059788 gttattcaatcgctttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaatctacttagttaat 11059873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 22592490 - 22592569
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||| ||      |||||||||||||||| ||||| |||||||    
T  22592490 atcgcttccgcagttattcaatcggtttaagagattaaaaggttatgac-----ttaggaaagggttttgactcaagagattgat 22592569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 13518294 - 13518377
Alignment:
Q  85 tattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    ||||||||||| |||||| ||||||| ||||||||      |||||||||| ||||||||||| ||||||| ||| ||| | |||||||    
T  13518294 tattcaatcggcttaagagattaaaaggttataac-----ttaggaaaggggtttgagtcaagagattgatcaaatctacttagttaat 13518377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 69 - 413
Target Start/End: Complemental strand, 22083587 - 22083260
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   ||||||||||| | |||||| ||||||||||||||||      |||||||||||||||||||||| ||||||| |||| |||||||    
T  22083587 acatcgcttccgcggttattcaatctgcttaagagattaaaatgttataac-----ttaggaaagggttttgagtcaagagattgatcaaagttaataag 22083493  T
Q  169 ttaatccgtcggaaagcctgaaattacaggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatc 268  Q
    |||||||||||             || |||||||| ||||||||||||| |||||||  |  ||||||||| || ||||||||||||| |||||||||||    
T  22083492 ttaatccgtcg-------------taaaggctgaatttacattgagaacttagagaatttatctaccacagagatcaatagaggattcgaaagcttaatc 22083406  T
Q  269 atctgtttttcatataatc-tccaaccattttttatttacttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaaca 365  Q
    || |||||| ||||| ||| | ||||||   |||||||||||||||||||||||||| | ||  | ||  ||||||||||||||| || | | ||||| |    
T  22083405 atttgttttccatattatctttcaacca--gtttatttacttgcaatttattatttttatgcaatcaactcaactgcctagggcaccattgaatttaata 22083308  T
Q  366 catccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
     |||||| ||||||| |  ||||| |||||||||||||||||||||||    
T  22083307 tatcctttattttaatgcttttgccgagtagaaattgaaacagtccct 22083260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 26808925 - 26808764
Alignment:
Q  17 tgaaactagagataggaagttgagagttaagacttaggattaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||   |||||| ||||| | |||||    
T  26808925 tgaaactagagataggaagttgagagttaagacttaggattaacgaactggaacatcgcttccacagttattcaatc-acttaagagattaagaggttat 26808827  T
Q  117 aacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaag 184  Q
    ||||     ||| ||||| |||||||||||  ||||||| ||| ||||||||||||||||||| ||||    
T  26808826 aacc-----tagaaaaggattttgagtcaaaagattgatcaaaactaataagttaatccgtcgtaaag 26808764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 6214514 - 6214397
Alignment:
Q  74 gcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||      ||||||||||| ||||||| |||||||||||||||||    
T  6214514 gcttccaaagttattcaatcggtttaagagattaaaaggttataacctaggaaaggac-----tttgagtcaagagattgatcaaagctaataagttaat 6214420  T
Q  174 ccgtcggaaagcctgaaattaca 196  Q
    | ||||||||| |||||||||||    
T  6214419 ctgtcggaaaggctgaaattaca 6214397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 16546977 - 16547088
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||| |||||||  ||||||||||| |||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | ||    
T  16546977 acatagcttccacggttattcaatcagtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttag 16547071  T
Q  169 ttaatccgtcggaaagc 185  Q
    ||||||||||| |||||    
T  16547072 ttaatccgtcgtaaagc 16547088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 16618685 - 16618574
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||| |||||||  ||||||||||| |||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | ||    
T  16618685 acatagcttccacggttattcaatcagtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttag 16618591  T
Q  169 ttaatccgtcggaaagc 185  Q
    ||||||||||| |||||    
T  16618590 ttaatccgtcgtaaagc 16618574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 332 - 410
Target Start/End: Original strand, 17152177 - 17152256
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtc 410  Q
    |||||||||||||||||||||  |||| ||||| |||||||| |||||||||  ||||| ||||||||||||||||||||    
T  17152177 aatccaactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtc 17152256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 8257876 - 8257961
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||||| |||||||    
T  8257876 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactaattagttaat 8257961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 23467298 - 23467213
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||||| |||||||    
T  23467298 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactaattagttaat 23467213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 43549181 - 43549270
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgt 177  Q
    |||||||||||||||||||| ||||||||||||||||      |||||||||||||||||||||| ||||||| ||| | | | |||||||||||    
T  43549181 gttattcaatcggtttaagagattaaaatgttataac-----ttaggaaagggttttgagtcaagagattgatcaaaaccacttagttaatccgt 43549270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 3541358 - 3541201
Alignment:
Q  22 ctagagataggaagttgagagttaagacttagga-ttaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacc 120  Q
    ||||||||||||| |||||||||| |||||| || ||||||  |||  |||| |||||||  ||||||||||| |||| ||| ||||||| ||||||||     
T  3541358 ctagagataggaaattgagagttatgacttatgaattaacgttcta--acatagcttccacggttattcaatcagtttcagagattaaaaggttataac- 3541262  T
Q  121 taggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaagc 185  Q
         |||||||||||||||||||||| ||||||| ||| | | |  |||||||||||| |||||    
T  3541261 ----ttaggaaagggttttgagtcaagagattgatcaaaaccacttggttaatccgtcgtaaagc 3541201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 6214410 - 6214350
Alignment:
Q  196 aggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattc 256  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||  ||||||||    
T  6214410 aggctgaaattacattgagaacatagagaatctagctaccacggtgaccaaaggaggattc 6214350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 379
Target Start/End: Original strand, 5742 - 5785
Alignment:
Q  336 caactgcctagggcaacaataattttaacacatccttaatttta 379  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  5742 caactgcctagggcaaccataattttaacacatccttaatttta 5785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 352
Target Start/End: Complemental strand, 6214275 - 6214180
Alignment:
Q  258 aaagcttaatcatctgtttttcatataatctccaaccattttttatttacttgcaatttattattttcagc-tttaatccaactgcctagggcaac 352  Q
    |||||||||||||||||||| ||| |||| |||||||| |||   ||||||||||||||| |||||| ||| ||||| || ||||| |||||||||    
T  6214275 aaagcttaatcatctgttttccatttaatttccaaccagtttaattttacttgcaatttactatttttagcatttaaccccactgcttagggcaac 6214180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 20100632 - 20100717
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  20100632 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 20100717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 2251847 - 2251955
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||    
T  2251847 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgatcaaaaccaatttgtt 2251941  T
Q  171 aatccgtcggaaag 184  Q
    ||| ||||| ||||    
T  2251942 aattcgtcgtaaag 2251955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 26460441 - 26460549
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||    
T  26460441 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgatcaaaaccaatttgtt 26460535  T
Q  171 aatccgtcggaaag 184  Q
    ||| ||||| ||||    
T  26460536 aattcgtcgtaaag 26460549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 8257717 - 8257650
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| |||||||    
T  8257717 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgat 8257650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 407
Target Start/End: Original strand, 16547225 - 16547301
Alignment:
Q  332 aatccaactgcctagggcaacaat-aattttaacacatccttaattttaacgtctttgctgagtagaaattgaaaca 407  Q
    |||||||||||||||||||||  | || ||||| |||||||| |||||||||  ||||| |||||||||||||||||    
T  16547225 aatccaactgcctagggcaacccttaaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaaca 16547301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 16618437 - 16618361
Alignment:
Q  332 aatccaactgcctagggcaacaat-aattttaacacatccttaattttaacgtctttgctgagtagaaattgaaaca 407  Q
    |||||||||||||||||||||  | || ||||| |||||||| |||||||||  ||||| |||||||||||||||||    
T  16618437 aatccaactgcctagggcaacccttaaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaaca 16618361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 23598905 - 23598826
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| |||||||    
T  23598905 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgat 23598826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 748171 - 748086
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||| | ||||||| ||| ||| | |||||||    
T  748171 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaggagattgatcaaaactacttagttaat 748086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 2349447 - 2349532
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      ||||||||||||||||||| || ||||||| ||| ||| | |||||||    
T  2349447 gttattcaatcggtttaagagattaaaaagttataac-----ttaggaaagggttttgagtcgagagattgatcaaaactacttagttaat 2349532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 5826838 - 5826753
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| |||||||  |||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  5826838 gttattcaatcggtttaagagattaaaagattataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 5826753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 8397833 - 8397918
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||     |||  |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  8397833 gttattcaatcggtttaagagattaaaaggtta-----tagcttaggaaagggttttgagtcaagagattgatcaaatctacttagttaat 8397918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 11825485 - 11825400
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||| | ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  11825485 gttattcaatcggtttaaaagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaatctacttagttaat 11825400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 22232757 - 22232672
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      || ||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  22232757 gttattcaatcggtttaagagattaaaaggttataac-----ttaagaaagggttttgagtcaagagattgatcaaaactacttagttaat 22232672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 22253982 - 22254067
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      || ||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  22253982 gttattcaatcggtttaagagattaaaaggttataac-----ttaagaaagggttttgagtcaagagattgatcaaaactacttagttaat 22254067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 22257246 - 22257331
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      || ||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  22257246 gttattcaatcggtttaagagattaaaaggttataac-----ttaagaaagggttttgagtcaagagattgatcaaaactacttagttaat 22257331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 26182289 - 26182386
Alignment:
Q  82 agttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcgga 181  Q
    |||||||||||| |||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| |||||  |||||| ||||| |    
T  26182289 agttattcaatcagtttaagagattaaaaggttataac-----ttaggaaagggttttgactcaagagattgatcaaaactaatttgttaattcgtcgta 26182383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 6964275 - 6964342
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||||||||||| ||||||| ||||||||      ||||||||| |||||||||||| |||||||    
T  6964275 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaaggattttgagtcaagagattgat 6964342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 26153138 - 26153236
Alignment:
Q  82 agttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcgga 181  Q
    |||||||||||| |||||||| ||||||| ||||| ||      |||||||||||||||||||||| |||| || ||| | | | ||||||||||||| |    
T  26153138 agttattcaatcagtttaagagattaaaaggttatgac-----ttaggaaagggttttgagtcaagagattaatcaaaaccacttagttaatccgtcgta 26153232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 710147 - 710105
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctagga 125  Q
    |||||||||||||||||||| ||||||| |||||||| |||||    
T  710147 gttattcaatcggtttaagagattaaaaggttataacttagga 710105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 17601607 - 17601653
Alignment:
Q  17 tgaaactagagataggaagttgagagttaagactt-aggattaacga 62  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||    
T  17601607 tgaaactagagataggaagttgtgagttatgacttcaggattaacga 17601653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 23313375 - 23313321
Alignment:
Q  359 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||| |||||||| |||||||||  | ||| |||||||||||||||||||||||    
T  23313375 tttaatacatcctttattttaacgcttatgccgagtagaaattgaaacagtccct 23313321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 38431381 - 38431417
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataac 119  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  38431381 gttattcaatcggtttaagagattaaaaggttataac 38431417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 35432686 - 35432524
Alignment:
Q  17 tgaaactagagataggaagttgagagttaagacttaggattaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttat 116  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||    | ||||||||||| ||||||| ||||| | |||||    
T  35432686 tgaaactagaaataggaagttgagagttaagacttagggttaacgaactagaacatcgcttatgtaattattcaatcgatttaagagattaagaggttat 35432587  T
Q  117 aacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaag 184  Q
    ||||     | ||||||| |||||||||||| ||||||| ||| ||||||||||||||||||| ||||    
T  35432586 aacc-----ttggaaaggattttgagtcaagagattgatcaaaactaataagttaatccgtcgtaaag 35432524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 207 - 410
Target Start/End: Original strand, 17944715 - 17944919
Alignment:
Q  207 acattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatc-tccaaccattttttattt 305  Q
    ||||||||||| |||||||  | |||||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||  |  |||||||    
T  17944715 acattgagaacttagagaatttagctaccacagagaccaatagaggattcgaaagcttaatcatctgttttccatattatcttccaac--tagtttattt 17944812  T
Q  306 acttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaattga 403  Q
    ||||||||||||||||||| | ||  | ||  ||||||||||||||| || | | ||||| | |||||| ||||||| |  ||||| |||||||||||||    
T  17944813 acttgcaatttattatttttatgcaatcaactcaactgcctagggcaccattgaatttaatatatcctttattttaatgcttttgccgagtagaaattga 17944912  T
Q  404 aacagtc 410  Q
    |||||||    
T  17944913 aacagtc 17944919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 2453257 - 2453356
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    ||||||||||||  |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||||| ||    
T  2453257 acatcgcttccacggttattcaatcggtttaagagattaaaaagttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactaattag 2453351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 19686144 - 19686243
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||||| ||    
T  19686144 acatcgcttccgcggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactaattag 19686238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 19689527 - 19689626
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    ||||||||||||  |||||||||||||||||||| ||||||| ||||||||      ||| |||||||||||||||||| ||||||| ||| ||||| ||    
T  19689527 acatcgcttccatggttattcaatcggtttaagagattaaaaggttataac-----ttagtaaagggttttgagtcaagagattgatcaaaactaattag 19689621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 34652899 - 34652800
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| ||||||||||||||||      |||||||||||||||||||||| ||||||| ||| ||| | ||    
T  34652899 acatcgcttccgcggttattcaatcggtttaagagattaaaatgttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttag 34652805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 17944625 - 17944715
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaa 164  Q
    |||||||||||   |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||||||||    
T  17944625 acatcgcttccgcggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaagctaa 17944715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 9690737 - 9690842
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||| |||||||  |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| | | | ||    
T  9690737 acatagcttccacggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaaccacttag 9690831  T
Q  169 ttaatccgtcg 179  Q
    |||||||||||    
T  9690832 ttaatccgtcg 9690842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 33321054 - 33320957
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaa 182  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| | | | ||||||||||||| ||    
T  33321054 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaaccacttagttaatccgtcgtaa 33320960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 3195068 - 3195167
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | ||    
T  3195068 acatcgcttccgcggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttag 3195162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 26337911 - 26338062
Alignment:
Q  22 ctagagataggaagttgagagttaagacttagga-ttaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacc 120  Q
    ||||||||||||| |||||||||| |||||| || ||||||  ||   ||||  ||||||  ||||||||||||| |||||| ||||||| ||||||||     
T  26337911 ctagagataggaaattgagagttatgacttatgaattaacgttctg--acataacttccacggttattcaatcggcttaagagattaaaaggttataac- 26338007  T
Q  121 taggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcg 179  Q
         |||||||||||||||||||||| ||||||| ||| | | | |||||||||||||    
T  26338008 ----ttaggaaagggttttgagtcaagagattgatcaaaaccacttagttaatccgtcg 26338062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 26548070 - 26548167
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    ||||||||||  |||||||||||||||||||| ||||||| ||||||||      || ||||||||||||||||||| ||||||| ||| ||| | ||||    
T  26548070 atcgcttccatggttattcaatcggtttaagagattaaaaggttataac-----ttaagaaagggttttgagtcaagagattgatcaaaactacttagtt 26548164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 26551629 - 26551726
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    ||||||||||  |||||||||||||||||||| ||||||| ||||||||      || ||||||||||||||||||| ||||||| ||| ||| | ||||    
T  26551629 atcgcttccatggttattcaatcggtttaagagattaaaaggttataac-----ttaagaaagggttttgagtcaagagattgatcaaaactacttagtt 26551723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 28562489 - 28562404
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  28562489 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 28562404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 28566057 - 28565972
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  28566057 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 28565972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 9690989 - 9691060
Alignment:
Q  337 aactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaaca 407  Q
    ||||||||||||||||  |||| ||||| |||||||| |||||||||  ||||| |||||||||||||||||    
T  9690989 aactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaaca 9691060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 40800046 - 40799961
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||| ||| ||||||| ||| ||| | |||||||    
T  40800046 gttattcaatcggtttaagagattaaaaagttataac-----ttaggaaagggttttgagttaagagattgatcaaaactacttagttaat 40799961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 1810524 - 1810471
Alignment:
Q  126 taggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcg 179  Q
    |||||||||||||||||||||| ||||||| ||| ||| | |||||||||||||    
T  1810524 taggaaagggttttgagtcaagagattgatcaaaactatttagttaatccgtcg 1810471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 4731961 - 4731894
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||| ||||||||||||| |||||||    
T  4731961 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagagttttgagtcaagagattgat 4731894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 33320798 - 33320739
Alignment:
Q  354 ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    |||| ||||| |||||||| |||||||||  ||||| |||||||||||||| ||||||||    
T  33320798 ataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaagcagtccct 33320739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 26726922 - 26726976
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctagga 125  Q
    |||||||||  | ||||||||||||||||||| ||||||| |||||||| |||||    
T  26726922 atcgcttccgcaattattcaatcggtttaagagattaaaaggttataacttagga 26726976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 413
Target Start/End: Complemental strand, 35432381 - 35432299
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||||| |||||||||||||  |||| ||||| ||||| || |||||||||  ||||  ||||| |||||||||||||||||    
T  35432381 aatccaattgcctagggcaacccataaatttaatacatcatttattttaacgcttttgtcgagtaaaaattgaaacagtccct 35432299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 69 - 411
Target Start/End: Original strand, 7212 - 7536
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| |||||||||||||||| |||||     || |||||||||||||| ||||||| || |||||||||    
T  7212 acatcgcttccgcggttattcaatcggtttaagagattaaaatgttataacttagga-----aaaggttttgagtcaagagattgatcaacgctaataag 7306  T
Q  169 ttaatccgtcggaaagcctgaaattacaggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatc 268  Q
    ||||| ||| | || | ||||               ||||||||||||| |||| ||  | |||||||||| ||| |||||||||||| |||| ||||||    
T  7307 ttaattcgttgtaagggctgat--------------ttacattgagaacttagataatttagctaccacagagactaatagaggattcgaaagtttaatc 7392  T
Q  269 atctgtttttcatataatc-tccaaccattttttatttacttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaaca 365  Q
    ||||||||| ||||| ||| ||||||||   |||||||||||||||||||||||||| | ||  | ||  ||||||||||||||| || | | ||||| |    
T  7393 atctgttttccatattatcttccaacca--gtttatttacttgcaatttattatttttatgcaatcaactcaactgcctagggcaccattgaatttaata 7490  T
Q  366 catccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
     |||||| |||||||||  ||| | |||||||||||||||||||||    
T  7491 tatcctttattttaacgctttttccgagtagaaattgaaacagtcc 7536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 49148000 - 49148082
Alignment:
Q  332 aatccaactgcctagggcaacaata-attttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    |||||||||||||||||||||  |  | ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  49148000 aatccaactgcctagggcaacttttgaatttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtccct 49148082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 409
Target Start/End: Complemental strand, 3087648 - 3087568
Alignment:
Q  332 aatccaactgcctagggcaacaa--taattttaacacatccttaatttt-aacgtctttgctgagtagaaattgaaacagt 409  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||||| |||||||||||| |||||||||| |||||||    
T  3087648 aatccaattgcctagggcaacaccgtaattttaacacatccttaattttaaacgtctttgctaagtagaaattaaaacagt 3087568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 33898313 - 33898411
Alignment:
Q  82 agttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcgga 181  Q
    ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| | | | ||||||||||||| |    
T  33898313 agttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaaccacttagttaatccgtcgta 33898407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 185
Target Start/End: Complemental strand, 50197098 - 50196992
Alignment:
Q  74 gcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||  |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| | | | |||||||    
T  50197098 gcttccacggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaaccatttagttaat 50197004  T
Q  174 ccgtcggaaagc 185  Q
    |||||| |||||    
T  50197003 ccgtcgtaaagc 50196992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 22448064 - 22448010
Alignment:
Q  359 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  22448064 tttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtccct 22448010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 22453298 - 22453244
Alignment:
Q  359 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  22453298 tttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtccct 22453244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 17902918 - 17902833
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  17902918 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 17902833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 22456608 - 22456554
Alignment:
Q  359 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||| |||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  22456608 tttaatacatcctttattttatcgtttttgctgagtagaaattgaaacagtccct 22456554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 37641856 - 37641941
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| |||| || |||||||||     |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  37641856 gttattcaatcggtttaagagattacaaggttataacc-----taggaaagggttttgagtcaagagattgatcaaatctacttagttaat 37641941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 49716347 - 49716446
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| |||||||  |||||||      |||||||||||||||||||||| ||||||| ||| ||| | ||    
T  49716347 acatcgcttccgcggttattcaatcggtttaagagattaaaagattataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttag 49716441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 49719829 - 49719928
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| |||||||  |||||||      |||||||||||||||||||||| ||||||| ||| ||| | ||    
T  49719829 acatcgcttccgcggttattcaatcggtttaagagattaaaagattataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttag 49719923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 16839065 - 16838968
Alignment:
Q  82 agttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcgga 181  Q
    ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||||| ||||| |    
T  16839065 agttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgatcaaaaccaatttgttaattcgtcgta 16838971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 16848995 - 16848898
Alignment:
Q  82 agttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcgga 181  Q
    ||||||||||||||||||||| ||||||| ||||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||||| ||||| |    
T  16848995 agttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgattcaagagattgatcaaaaccaatttgttaattcgtcgta 16848901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 28918363 - 28918448
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||| |||||||  |||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  28918363 gttattcaatcggtttaagagattaaaagattataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 28918448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 413
Target Start/End: Original strand, 34066452 - 34066529
Alignment:
Q  336 caactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||||||||||||| |  | | ||||| |||||||| ||||||| || ||| | |||||||||||||||||||||||    
T  34066452 caactgcctagggcacccttgaatttaatacatcctttattttaaagttttttccgagtagaaattgaaacagtccct 34066529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 8435366 - 8435418
Alignment:
Q  359 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    ||||| |||||||| |||||||||  ||||| |||||||||||||||||||||    
T  8435366 tttaatacatcctttattttaacgcttttgcagagtagaaattgaaacagtcc 8435418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 34552814 - 34552747
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||||||||||| ||||||| ||||||||      | |||||||||||||||||||| |||||||    
T  34552814 gttattcaatcggtttaagagattaaaaggttataac-----tttggaaagggttttgagtcaagagattgat 34552747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 3087856 - 3087758
Alignment:
Q  82 agttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcgga 181  Q
    ||||||||||||||||||||| ||||||| ||||||||      ||| |||| |||||||||| || ||||||| ||| | | | ||||||||||||| |    
T  3087856 agttattcaatcggtttaagagattaaaaggttataac-----ttagtaaagagttttgagtcgagagattgatcaaaaccacttagttaatccgtcgta 3087762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 6205868 - 6205936
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||||||||||| ||||||| |||||||| |||||    || || |||||||||||| |||||||    
T  6205868 gttattcaatcggtttaagagattaaaaagttataacttagga----aagggtttttgagtcaagagattgat 6205936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 20981348 - 20981395
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggatagga 130  Q
    |||||||||||||||||||| ||||||| |||||||| ||||| ||||    
T  20981348 gttattcaatcggtttaagagattaaaaggttataacttaggaaagga 20981395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 23441413 - 23441323
Alignment:
Q  84 ttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcg 179  Q
    ||||||| ||||||||||| ||||||| ||||||||      ||||||||||||||| |||||| ||||||| ||| | | | |||||||||||||    
T  23441413 ttattcattcggtttaagagattaaaaggttataac-----ttaggaaagggttttgtgtcaagagattgatcaaaaccacttagttaatccgtcg 23441323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 21153358 - 21153399
Alignment:
Q  331 taatccaactgcctagggcaacaataattttaacacatcctt 372  Q
    |||||||||||||||||||||| |||| ||||| ||||||||    
T  21153358 taatccaactgcctagggcaaccataaatttaatacatcctt 21153399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 24200386 - 24200278
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagtt 170  Q
    |||||||||  ||||||||||||||||||||| || ||||  |||||||      |||||||||||||||| ||||| ||||||| ||| | |||  |||    
T  24200386 atcgcttccgcagttattcaatcggtttaagagataaaaagattataac-----ttaggaaagggttttgattcaagagattgatcaaaaccaatttgtt 24200292  T
Q  171 aatccgtcggaaag 184  Q
    ||| ||||| ||||    
T  24200291 aattcgtcgtaaag 24200278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 18392381 - 18392447
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    ||||||||||||||||||||  |||||| ||||||||      |||||||||||||||||||||| |||||||    
T  18392381 gttattcaatcggtttaaga-gttaaaaggttataac-----ttaggaaagggttttgagtcaagagattgat 18392447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 13814 - 13896
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    |||||||||||||||||||||  || | ||||| |||||||| |||||||||  ||||| |||||||||||||||||||||||    
T  13814 aatccaactgcctagggcaacccatcaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtccct 13896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 11471 - 11553
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||||||||||||||| |||  |||| ||||| |||||||| |||||||||  ||||| ||||| |||||||||||||||||    
T  11471 aatccaactgcctagggaaacccataaatttaatacatcctttattttaacgcttttgccgagtataaattgaaacagtccct 11553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 13520 - 13677
Alignment:
Q  22 ctagagataggaagttgagagttaagacttagga-ttaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacc 120  Q
    ||||||||||||| |||||||||| |||||| || ||| ||  ||   |||| |||||||  |||||||||||||||||||| ||||||| | ||||||     
T  13520 ctagagataggaaattgagagttatgacttatgaattagcgttctg--acatagcttccacggttattcaatcggtttaagagattaaaagggtataac- 13616  T
Q  121 taggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaagc 185  Q
         |||||||||||||||||||||  ||||||| ||| | | | ||||||||||||| |||||    
T  13617 ----ttaggaaagggttttgagtcaatagattgatcaaaaccacttagttaatccgtcgtaaagc 13677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 411
Target Start/End: Complemental strand, 90440 - 90360
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 411  Q
    ||||||| |||||||||||||  |||| ||||| |||||||| |||||||||  ||||| |||||||||||||||||||||    
T  90440 aatccaattgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtcc 90360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 92423 - 92518
Alignment:
Q  85 tattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtcggaaag 184  Q
    |||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| | | | ||||||||||||| ||||    
T  92423 tattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaaccacttagttaatccgtcgtaaag 92517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 4187 - 4337
Alignment:
Q  22 ctagagataggaagttgagagttaagacttagga-ttaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacc 120  Q
    |||||||| |||| |||||||||| |||||| || ||||||  ||   |||| |||||||  |||||||||||||||||||| ||||||| ||||||||     
T  4187 ctagagattggaaattgagagttatgacttatgaattaacgttctg--acatagcttccacggttattcaatcggtttaagagattaaaaggttataac- 4283  T
Q  121 taggataggaaagggttttgagtcaagggattgattaaagctaataagttaatccgtc 178  Q
         |||||||||||||||||||||  ||||||| ||| | | | ||||||||||||    
T  4284 ----ttaggaaagggttttgagtcaaaagattgatcaaaaccacttagttaatccgtc 4337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 4481 - 4563
Alignment:
Q  332 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||||| | |||||||||||  |||| ||||| |||||||| |||||||||  ||| | ||||||||||||| |||||||||    
T  4481 aatccaatttcctagggcaacccataaatttaatacatcctttattttaacgctttttccgagtagaaattgatacagtccct 4563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 42823 - 42905
Alignment:
Q  332 aatccaactgcctagggcaa-caataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 413  Q
    ||||||| ||||||||| || | |||| ||||| |||||||| |||||||||| ||||| |||||||| ||||||||||||||    
T  42823 aatccaaatgcctagggaaatccataaatttaatacatcctttattttaacgtttttgccgagtagaagttgaaacagtccct 42905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 29250 - 29377
Alignment:
Q  22 ctagagataggaagttgagagttaagacttagga-ttaacgagctagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacc 120  Q
    ||||||||||||| |||||| ||| |||||| || ||||||  ||   |||| |||||||  ||||||||||||||||| || ||||||| ||||||||     
T  29250 ctagagataggaaattgagaattatgacttatgaattaacgttctg--acatagcttccacggttattcaatcggtttaggaaattaaaaggttataac- 29346  T
Q  121 taggataggaaagggttttgagtcaagggattgat 155  Q
         |||||||||||||||||||||| |||||||    
T  29347 ----ttaggaaagggttttgagtcaagagattgat 29377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 27338 - 27392
Alignment:
Q  71 atcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctagga 125  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||||||||    
T  27338 atcgcttccgcagttattcaatcggtttaagagattaaaaggttataacctagga 27392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 2443 - 2527
Alignment:
Q  84 ttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    ||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  2443 ttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgatcaaaactacttagttaat 2527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1048 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1048
Description:

Target: scaffold1048; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 1376 - 1432
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctagga 125  Q
    |||||||||||  ||||||||||||||||||||| ||||||| |||||||| |||||    
T  1376 acatcgcttccgcagttattcaatcggtttaagagattaaaaggttataacttagga 1432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 19886 - 19819
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgat 155  Q
    |||||||||||||||||||| ||||||| ||||||||      |||||||||||||||||||||| |||||||    
T  19886 gttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggttttgagtcaagagattgat 19819  T

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Target: scaffold0214 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 13581 - 13679
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| ||||||| ||||||||      |||||||| ||||||||||||| ||||||| ||| ||||| ||    
T  13581 acatcgcttccgcggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagagttttgagtcaagagattgatgaaa-ctaattag 13674  T

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Target: scaffold0214; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 27597 - 27695
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||   |||||||||||||||||||| ||||||| ||||||||      |||||||| ||||||||||||| ||||||| ||| ||||| ||    
T  27597 acatcgcttccgcggttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagagttttgagtcaagagattgatgaaa-ctaattag 27690  T

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Target: scaffold0214; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 20044 - 20121
Alignment:
Q  83 gttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaat 165  Q
    |||||||||||||||||||  ||||||| ||||||||      |||||||| ||||||||||||| ||||||| ||| |||||    
T  20044 gttattcaatcggtttaagcgattaaaaggttataac-----ttaggaaagagttttgagtcaagagattgatcaaaactaat 20121  T

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Target: scaffold0062 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 53026 - 52927
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    ||||| |||||  ||||||||||||||||||||| ||||||| ||||||||      ||||||||||||| |||||||| ||||||| ||| ||| | ||    
T  53026 acatctcttccgcagttattcaatcggtttaagagattaaaaggttataac-----ttaggaaagggtttcgagtcaagagattgatcaaaactacttag 52932  T

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Target: scaffold0062; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 67975 - 67876
Alignment:
Q  69 acatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctaggataggaaagggttttgagtcaagggattgattaaagctaataag 168  Q
    |||||||||||  |||||||||||||||| |||| ||||||| ||||||||      ||||||||||||| |||||||| ||||||| ||| ||| | ||    
T  67975 acatcgcttccgcagttattcaatcggttgaagagattaaaaggttataac-----ttaggaaagggtttcgagtcaagagattgatcaaaactacttag 67881  T

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Target: scaffold0175 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 28807 - 28747
Alignment:
Q  65 tagaacatcgcttccaaagttattcaatcggtttaagatattaaaatgttataacctagga 125  Q
    |||||||||||||||   ||||||||||| |||||||| ||||||| |||||||| |||||    
T  28807 tagaacatcgcttccgcggttattcaatctgtttaagacattaaaaggttataacttagga 28747  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 228660 - 228707
Alignment:
Q  126 taggaaagggttttgagtcaagggattgattaaagctaataagttaat 173  Q
    |||||||||||||||||||||| ||||||| ||| ||||| |||||||    
T  228660 taggaaagggttttgagtcaagagattgatcaaaactaattagttaat 228707  T

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