View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_39 (Length: 423)
Name: NF3710_low_39
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Original strand, 21821251 - 21821646
Alignment:
| Q |
16 |
actttcaaaactaactcaagaacaatatattagtaccatcaaagaacgtgtaagatgttatttggacaaatcaaacgcgttaaaaactttacaaaaacaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21821251 |
actttcaaaactaactcaagaacaatatattagtaccatcaaagaacgtgtaagatgttatttggacaaatcaaacgtgttaaaaactttacaaaaacaa |
21821350 |
T |
|
| Q |
116 |
tttgatttgctgacagaagaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaattaaaatcttataacgagaaatgaaattttggaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21821351 |
tttgatttgctgacagaagaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaattaaaatcttataacgagaaatgaaattttggaga |
21821450 |
T |
|
| Q |
216 |
aatatcaatttttaaacatcnnnnnnnttgatagaacattgacaaaattcgataatgctcttgaagaatttatcattggtggtattaaaaaagtaagtta |
315 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21821451 |
aatatcaatttttaaacatcaagaaaattgatagaacattgacaaaattcgataatgctcttgaagaatttatcattggtggtattaaaaaagtaagtta |
21821550 |
T |
|
| Q |
316 |
gcttccatgaaatcactaacacacaaccaccaccatctcttgtacttccatccgctgaaattaattcacccactcttaatgcatccaacaatacct |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21821551 |
gcttccatgaaatcactaacacacaaccaccaccatctcttgtacttccatccactgaaattaattcacccactcttaatgcatccaacaatacct |
21821646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 81 - 325
Target Start/End: Original strand, 11450548 - 11450793
Alignment:
| Q |
81 |
acaaatcaaacgcgttaaaaactttacaaaaacaatttgatttgctgacagaagaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaa |
180 |
Q |
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|||||||||| || |||||||| || |||||| | ||||||||| ||||| |||| |||||| ||||| |||||||||| || || ||||||| ||||| |
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| T |
11450548 |
acaaatcaaaagctttaaaaaccttgcaaaaatagtttgatttgttgacataagagtccaagctcttggaacaccaaaataaaagactgtcaatccaaaa |
11450647 |
T |
|
| Q |
181 |
ttaaaatcttataacgagaaatgaaattttggagaaatatcaatttttaaacatcnnnnnnnttgatagaacattgacaaaattcgataatgctcttgaa |
280 |
Q |
| |
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| ||||||| | || || |||||||||||| |||||| | ||| ||| ||||||| |||| ||| | ||||| ||||| ||||||| | ||||| |
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| T |
11450648 |
tgaaaatctaaaaatgataaatgaaattttagagaaaaaacaactttcaaacatcaagaaaattgacagacctttgactaaatttgataatgttattgaa |
11450747 |
T |
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| Q |
281 |
gaatttatcattggtggtatt-aaaaaagtaagttagcttccatga |
325 |
Q |
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| T |
11450748 |
gagtttatcattggtgggattgacaaaagcaaattagcttacatga |
11450793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 325
Target Start/End: Complemental strand, 11544187 - 11543942
Alignment:
| Q |
81 |
acaaatcaaacgcgttaaaaactttacaaaaacaatttgatttgctgacagaagaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaa |
180 |
Q |
| |
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|||||||||| || |||||||| || |||||| | ||||||||| ||||| |||| |||||| ||||| |||||||||| || |||||||||| ||||| |
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| T |
11544187 |
acaaatcaaaagctttaaaaaccttgcaaaaatagtttgatttgttgacacaagagtccaagctcttggaacaccaaaataaaagtctgtcaatccaaaa |
11544088 |
T |
|
| Q |
181 |
ttaaaatcttataacgagaaatgaaattttggagaaatatcaatttttaaacatcnnnnnnnttgatagaacattgacaaaattcgataatgctcttgaa |
280 |
Q |
| |
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| ||||||| | || || |||||||||||| |||||| | ||| ||| ||||||| |||| | | | ||||| ||||| |||||| | ||||| |
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| T |
11544087 |
tgaaaatctcaaaatgataaatgaaattttagagaaaaaacaactttcaaacatcaagaaaattgaaaaacctttgactaaatttgataataatattgaa |
11543988 |
T |
|
| Q |
281 |
gaatttatcattggtggtatt-aaaaaagtaagttagcttccatga |
325 |
Q |
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|| |||||||||||||| ||| | ||||| || ||||||| ||||| |
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| T |
11543987 |
gagtttatcattggtggaattgacaaaagaaaattagcttacatga |
11543942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 298
Target Start/End: Complemental strand, 14863852 - 14863666
Alignment:
| Q |
111 |
aacaatttgatttgctgacagaagaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaattaaaatcttataacgagaaatgaaatttt |
210 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| | |||||| ||| ||| || | ||||||| ||||||| |
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| T |
14863852 |
aacagtttgatttgttgacagaagaatctaagttcttgaaacaccaaaacaagagtttgtcgatccaaaatgaaattctcatgatgagaaataaaatttt |
14863753 |
T |
|
| Q |
211 |
ggagaaatatcaatttttaaacatcnnnnnnnttgatagaacattgacaaaattcgataatgctcttgaagaatttatcattggtggt |
298 |
Q |
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||||||| ||||||||| ||||||| |||| ||| | |||||||||| ||||||||||||||||| | |||||| |||||| |
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| T |
14863752 |
ggagaaagatcaattttcaaacatc-aagaagttgacagacccttgacaaaatgtgataatgctcttgaagagtctatcatgggtggt |
14863666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 24247621 - 24247693
Alignment:
| Q |
254 |
ttgacaaaattcgataatgctcttgaagaatttatcattggtggtatt-aaaaaagtaagttagcttccatga |
325 |
Q |
| |
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|||| |||||| ||||||| ||||||||| |||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
24247621 |
ttgataaaatttgataatgttcttgaagattttatcattggtagtattggcaaaagcaagttagcttccatga |
24247693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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