View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_44 (Length: 395)
Name: NF3710_low_44
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 6 - 186
Target Start/End: Original strand, 1737833 - 1738009
Alignment:
| Q |
6 |
aatatgagtatcatgcagtcagttgttggattttgaaatataatgatattagagttgtttgtatattaggttatcgatctgttgatgaacatattttctt |
105 |
Q |
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| T |
1737833 |
aatatgagtatcttgcagtgagtagttggattttgaagtataatgacattagagttgtttgtatattaggttatc----tgttgatgaaaatattttctt |
1737928 |
T |
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| Q |
106 |
gactgattattttacttgtgaaatttgcactagtgtttagctgggagtgagtagaactattaagttttgaaataacctaaa |
186 |
Q |
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| T |
1737929 |
gactggttattttacttaagaaatttgcactagtgtttagcagggagttagtagaactattaagttttgaaataacctaaa |
1738009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 152 - 395
Target Start/End: Original strand, 1716485 - 1716729
Alignment:
| Q |
152 |
gtgagtagaactattaagttttgaaataacctaaattaaacagtct-gagtttcggctagatgtgggaaataaggtgaatttatttgtatttgctaatgt |
250 |
Q |
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| T |
1716485 |
gtgagtagaactat-aagttttgaaataacctaaagtaaacagttaagagtttcaacttcatatggaaaataaggtgaacttatttttatctgctaatgt |
1716583 |
T |
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| Q |
251 |
attgaaatacagtcattttgatgagcatggcaatcaagccaaatgggtggaagatgtcaatgatacactactagatctacatacttccattcatgaaatt |
350 |
Q |
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| T |
1716584 |
attgaaatagagtcgttttgatgagcatagaactcaagtcaaacgagcgtaagatgtcaagggtacactactagatctacatattgtcattcatgaaatt |
1716683 |
T |
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| Q |
351 |
accaatgactcatttctaaaagaaagctcctttta-ttatttttgt |
395 |
Q |
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| T |
1716684 |
atcattgactcatttctgaaataaagctccttttatttatttttgt |
1716729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 282 - 395
Target Start/End: Original strand, 1738009 - 1738129
Alignment:
| Q |
282 |
aatcaagccaaatgggtggaagatgtcaatgataca------ctactagatctacatacttccattcatgaaattaccaatgactcatttctaaaagaaa |
375 |
Q |
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| T |
1738009 |
aatcaagccaaatgggtggaagatgtcaatggtacacttacactactagatctacatactgccattcatgaaattaccaatgactcatttctaaaagaaa |
1738108 |
T |
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| Q |
376 |
gctcctttta-ttatttttgt |
395 |
Q |
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| T |
1738109 |
gctccttttatttatttttgt |
1738129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 33577656 - 33577697
Alignment:
| Q |
214 |
tgggaaataaggtgaatttatttgtatttgctaatgtattga |
255 |
Q |
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| T |
33577656 |
tgggaaataaggtgattttagttttatttgctaatgtattga |
33577697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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