View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_5 (Length: 700)
Name: NF3710_low_5
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Original strand, 15136827 - 15137328
Alignment:
| Q |
17 |
aaaatctaattaactaataaacctatttgcttaaaacttctttcaacaagaacaaaatgttgctaaaataagtaaattaaattaatatgaatttagtaga |
116 |
Q |
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| T |
15136827 |
aaaatctaattaactaataaacctatttgcttaaaacttctttcaacaagaacaaaatgttgctaaaactagtaaaataaattaatatgaatttagtaga |
15136926 |
T |
|
| Q |
117 |
tgctacatagtacatacccttctccatagttatagatctcatgtgacatcttgaagaaaagttcaggttgaagaccttggtaaggttgaattaattcaca |
216 |
Q |
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| T |
15136927 |
tgctacatagtacatacccttctccatagttatagatctcatgtgacatcttgaagaaaagttcaggttgaagaccttggtaaggttgaattaattcaca |
15137026 |
T |
|
| Q |
217 |
gttcccataaactgatgatgagctaggacaatcaccagtgtttatttcaggtgctgctgatgctgcaaaattgcagaatccatcttcccaaaccaatatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15137027 |
gttcccataaactgatgatgagctaggacaatcaccagtgtttatttcaggtgctgctgatgctgcaaaattgcagaatccatcttcccaaaccaatatc |
15137126 |
T |
|
| Q |
317 |
ctgtgcatgcatttatagaaaacatcacaaacttttaatcactaaataaatgatgacaatataaaaatatcattaattcc------annnnnnnnnncta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
15137127 |
ctgtgcatgcatttatagaaaacatcacaaacttttaatcactaaataaatgatgacaatataaaaatatcattaattccatttttattttatttttata |
15137226 |
T |
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| Q |
411 |
atcaagttattaacactcatgaaatgaaatcattaccaattccttctgtttcctcttgatctatcatatgccccttgtccttcccacctatattatacac |
510 |
Q |
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| T |
15137227 |
atcaagttattaacactcatgaaatgaaatcattaccaattccttctgtttcctcttgatctatcatatgccccttgtccttcccacctatattatacac |
15137326 |
T |
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| Q |
511 |
ac |
512 |
Q |
| |
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|| |
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| T |
15137327 |
ac |
15137328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 631 - 690
Target Start/End: Original strand, 15137453 - 15137512
Alignment:
| Q |
631 |
tgttttctacacatgaacattttgagctatatatagaattgattgatgtattttcctatg |
690 |
Q |
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| T |
15137453 |
tgttttctacacatgaacattttgagctatatatagaattgattgatgtattttcctatg |
15137512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 18745984 - 18745908
Alignment:
| Q |
244 |
acaatcaccagtgtttatttcaggtgctgctgatgctgcaaaattgcagaatccatcttcccaaaccaatatcctgt |
320 |
Q |
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||||||||||| || ||||||||||| || |||||||||||| ||||||||||||||||| |||| ||||| |||| |
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| T |
18745984 |
acaatcaccagagtatatttcaggtgttgttgatgctgcaaagttgcagaatccatcttctaaaacgaatatgctgt |
18745908 |
T |
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