View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_55 (Length: 347)
Name: NF3710_low_55
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 197 - 336
Target Start/End: Original strand, 26096340 - 26096479
Alignment:
| Q |
197 |
cttaccttgttgagttgatgtattgtatgagtatggaattatcttttggtcttaccacagttgctggaaattttgcataattatttacaacagctccatc |
296 |
Q |
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| T |
26096340 |
cttaccttgttgagttgatgtattgtatgagtatggaattatcttttggtcttaccacagttgctggaaattttgcataattatttacaacagctccatc |
26096439 |
T |
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| Q |
297 |
ttgatcactaatatgaacaagccctaatccacctgccttt |
336 |
Q |
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| T |
26096440 |
ttgatcactaatatgaacaagccctaatccacctgccttt |
26096479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 26096146 - 26096287
Alignment:
| Q |
3 |
agatgatttataataaagatttaataaaattatatgaaacaaatttacgtataattttttgatgtaacatataccgaagaaatttgattggatgtaagtg |
102 |
Q |
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| T |
26096146 |
agatgatttataataaagatataataaaattatatgtaacaaatttacgtataattttttgatgtaacatataccgaagaaatttgattggatgttagtg |
26096245 |
T |
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| Q |
103 |
taaaattaacttaaatcgaactatgcatatccattaatcttg |
144 |
Q |
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| T |
26096246 |
taaaattaacttaaattgaactatgcatatccattaatcttg |
26096287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 334
Target Start/End: Complemental strand, 48374077 - 48373980
Alignment:
| Q |
237 |
atcttttggtcttaccacagttgctggaaattttgcataattatttacaacagctccatcttgatcactaatatgaacaagccctaatccacctgcct |
334 |
Q |
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| T |
48374077 |
atcttttgatcttaccactgttgctgggaagtctgcataaatatttgccacagctccatcctggtcagtaatatgaacaagacctaatccacccgcct |
48373980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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