View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_56 (Length: 342)
Name: NF3710_low_56
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 13812831 - 13812496
Alignment:
| Q |
13 |
aatatatataagtaagataagtacatgta-------agaacaaagtaccgaaaaataaggggtaaaggtttcacagtctcacgttcatgaatcatgacaa |
105 |
Q |
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| T |
13812831 |
aatatatataagtaagataagtacatgtaccttgtaagaacaaagtaccgaaaaataaggggtaaaggtttcacagtctcacgttcatgaatcatgacaa |
13812732 |
T |
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| Q |
106 |
aaataaa---------ttttgcttggattgcaccactgtctccttgtcttgacatgctacatctctagcaacgtaggtcgtatgtaactagaa------- |
189 |
Q |
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| T |
13812731 |
aaacaaaacgaacaaattttgcttggattgcaccactgtctccttgtcttgacatgctacatctctagcaacgtaggtcgtatgtaactagaaactagaa |
13812632 |
T |
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| Q |
190 |
ctagaattataactattggttggctgttcttttaactgaaaagagtatacagtagtagactagtatagtttactattcaatcataggtagnnnnnnnata |
289 |
Q |
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| T |
13812631 |
ctagaattataactattggttggctgttcttttaactgaaacgagtatacagtagtagactag--tagtttactattcaatcataggtagttttttt-ta |
13812535 |
T |
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| Q |
290 |
aatattatgtcatgtcatgaatttctataagttcttttt |
328 |
Q |
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| T |
13812534 |
aatattatgtcatgtcatgaatttctataagttcttttt |
13812496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 13950712 - 13950759
Alignment:
| Q |
25 |
taagataagtacatgtaagaacaaagtaccgaaaaataaggggtaaag |
72 |
Q |
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| T |
13950712 |
taagataagtacatctcagaataaagtaccgaaaaataaggggtaaag |
13950759 |
T |
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