View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_low_58 (Length: 341)
Name: NF3710_low_58
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_58 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 11729350 - 11729021
Alignment:
| Q |
1 |
aaatccagaaaaccggcacgtttggaaagttctacaaaagggagatgtgtttttgtttcctatagggctcattcactatcaaagaaatattagatatatg |
100 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
11729350 |
aaatccagaaaaccggcactctaggaaagttctacaaaagggagatgtgtttgtgtttcctatagagctcattcactatcaaagaaatattggatatatg |
11729251 |
T |
|
| Q |
101 |
acaatgttgttgccattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagtgaagt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
11729250 |
acaacgttgttgccattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtttggggctgcacctgaaatagctagtgaagt |
11729151 |
T |
|
| Q |
201 |
tctcattaagtcttttaaattggacaagactaccatcaattacttgcggtccaagttttagaatattgggagggaattcagctgtttttgtttgtttgta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729150 |
tctcattaagtcttttaaattggacaagactac---caattacttgctgtccaagttttagaatattgggagggaattcagctgtttttgtttgtttgta |
11729054 |
T |
|
| Q |
301 |
tgtttcatttgttggtcttccttatttcctatg |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11729053 |
tgtttcatttgttggtcttccttatttcctatg |
11729021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 11720236 - 11719907
Alignment:
| Q |
1 |
aaatccagaaaaccggcacgtttggaaagttctacaaaagggagatgtgtttttgtttcctatagggctcattcactatcaaagaaatattagatatatg |
100 |
Q |
| |
|
|||||| |||||||| ||| || |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || || |
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|
| T |
11720236 |
aaatcctgaaaaccgccactttaagaaagtactacaaaagggagatgtgtttgtgtttcctatagggctcattcactatcaaagaaatattggaaat-tg |
11720138 |
T |
|
| Q |
101 |
acaatgttgttgccattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagtgaagt |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
11720137 |
t-aatgttgttgctattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagcaagtgaagt |
11720039 |
T |
|
| Q |
201 |
tctcattaagtcttttaaattggacaagactaccatcaattacttgcggtccaagttttagaatattgggaggg-aattcagctgtttttgtttgtttgt |
299 |
Q |
| |
|
||||| ||| |||||||||||||||||| | ||||||||||||| | ||| |||||||||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
11720038 |
gctcatcaaggcttttaaattggacaagaatgccatcaattacttacagtcaaagttttagaatattgggagggaaattcagctctttttgtttgtttgt |
11719939 |
T |
|
| Q |
300 |
atgtttcatttgttggtcttccttatttccta |
331 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |
|
|
| T |
11719938 |
atgtttcattcgtctgtcttccttatttccta |
11719907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 5 - 313
Target Start/End: Complemental strand, 11680992 - 11680683
Alignment:
| Q |
5 |
ccagaaaaccggcacgtttggaaagttctacaaaagggagatgtgtttttgtttc---ctatagggctcattcactatcaaagaaatattagatatatga |
101 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||| | | |
|
|
| T |
11680992 |
ccagaaaaccgccacttttgtaaagttctacataagggagatgtgtttgtgtttcttcctataggtctcattcactatcaaagaaatattggataca--a |
11680895 |
T |
|
| Q |
102 |
caatgttgttgccattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagtgaagtt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
11680894 |
caatgttgttgccattgctgctcttagtagccagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagcgaagtt |
11680795 |
T |
|
| Q |
202 |
ctcattaagtcttttaaattggacaagactaccatcaattacttgcggtccaagttttagaatattgggagggaattcagctgtttttgtttgtttgtat |
301 |
Q |
| |
|
||||||| | ||||| |||||||||||| | ||||||||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11680794 |
ctcattatggcttttcaattggacaagaatgccatcaattacttgcagtcgaagttttaaaatattgggagggaattcaactgtttttgtttgtttgtat |
11680695 |
T |
|
| Q |
302 |
gtttcatttgtt |
313 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11680694 |
gtttcatttgtt |
11680683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 11693747 - 11694048
Alignment:
| Q |
5 |
ccagaaaaccggcacgtttggaaagttctacaaaagggagatgtgtttttgtttc---ctatagggctcattcactatcaaagaaatattagatatatga |
101 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||| ||||||||||||||| |||||| ||||||| || ||||||||||||||||||||| |||| | | |
|
|
| T |
11693747 |
ccagaaaaccgccacttttgtaaagttctacataagggagatgtgtttgtgtttctacctataggtcttattcactatcaaagaaatattggataca--a |
11693844 |
T |
|
| Q |
102 |
caatgttgttgccattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagtgaagtt |
201 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
11693845 |
caatgttgttgccattgctgctcttactagcaagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagcgaagtt |
11693944 |
T |
|
| Q |
202 |
ctcattaagtcttttaaattggacaagactaccatcaattacttgcggtccaagttttagaatattgggagggaattcagctgtttttgtttgtttgtat |
301 |
Q |
| |
|
||||||||| ||||| |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11693945 |
ctcattaaggcttttcaattggacaagaatgccatcaattacttgcagtcgaagttttagaatattgggaaggaattcagctgtttttgtttgtttgtat |
11694044 |
T |
|
| Q |
302 |
gttt |
305 |
Q |
| |
|
|||| |
|
|
| T |
11694045 |
gttt |
11694048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 11672106 - 11671845
Alignment:
| Q |
1 |
aaatccagaaaaccggcacgtttggaaagttctacaaaagggagatgtgtttttgtttcctatagggctcattcactatcaaagaaatattagatatatg |
100 |
Q |
| |
|
||||||||||||||| ||| || | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | ||| |
|
|
| T |
11672106 |
aaatccagaaaaccgccactttagtaaagttctacataagggagatgtgtttgtgtttcctatagggctcattcactatcaaagaaatatcgg--acatg |
11672009 |
T |
|
| Q |
101 |
acaatgttgttgccattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagtgaagt |
200 |
Q |
| |
|
|||||||| |||| || |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11672008 |
acaatgttattgcaatcgctgctcttagtagccagaatccgggagctatcactattggcaatgcagtgtttggtgctacacctgaaatagctagtgaagt |
11671909 |
T |
|
| Q |
201 |
tctcattaagtcttttaaattggacaagactaccatcaattacttgcggtccaagttttagaat |
264 |
Q |
| |
|
|| |||||| ||||| | |||| |||| | ||||||| || |||| ||| |||||||||||| |
|
|
| T |
11671908 |
gcttattaaggcttttcagctggagaagaatgccatcaactatttgcagtctaagttttagaat |
11671845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 11712779 - 11712959
Alignment:
| Q |
5 |
ccagaaaaccggcacgtttggaaagttctacaaaagggagatgtgtttttgtttcctatagggctcattcactatcaaagaaatattagatatatgacaa |
104 |
Q |
| |
|
||||||||||| ||| || | ||||||||||| ||| ||||||||||| |||||| |||||| |||||||||||||||||||||||| |||| | |||| |
|
|
| T |
11712779 |
ccagaaaaccgccactttcgtaaagttctacataagagagatgtgtttgtgtttc-tataggtctcattcactatcaaagaaatattggataca--acaa |
11712875 |
T |
|
| Q |
105 |
tgttgttgc--------cattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtttggggctaca |
180 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
11712876 |
tgttgttgccaacttgccattgctgctcttagtagccagaatccaggagctatcactattggcaatgaagtgtttggggctaca |
11712959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 8 - 315
Target Start/End: Complemental strand, 7662196 - 7661892
Alignment:
| Q |
8 |
gaaaaccggcacgtttggaaagttctacaaaagggagatgtgtttttgtttcctatagggctcattcactatcaaagaaatattagatatatgacaatgt |
107 |
Q |
| |
|
|||||||| ||| || | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || || | |||| |
|
|
| T |
7662196 |
gaaaaccgccactttagaaaagttctacaaaagggagatgtgtttgtgtttcctataggactcattcactatcaaagaaatataggaaat--gctcatgt |
7662099 |
T |
|
| Q |
108 |
tgttgccattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagtgaagttctcatt |
207 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||| ||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
7662098 |
tgttgccattgcagctcttagtagccagaatccaggaggtatcactattggtaatgcaatgtttggggctacacctgagatagctagtgaagttcttgtt |
7661999 |
T |
|
| Q |
208 |
aagtcttttaaattggacaagactaccatcaattacttgcggtccaagttttagaatattgggagggaattcagctgtttttgtttgtttgtatgtttca |
307 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||||||||||| ||| |||||||||| ||||||| | | ||| | | ||||||||||||||||||||||| |
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|
| T |
7661998 |
aaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattgggtgtg-attttgatatttttgtttgtttgtatgtttca |
7661900 |
T |
|
| Q |
308 |
tttgttgg |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
7661899 |
tttgttgg |
7661892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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