View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_low_59 (Length: 334)
Name: NF3710_low_59
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_59 |
 | |
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| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 16334695 - 16334377
Alignment:
| Q |
1 |
catctccttttttaagctcgttgtcatctataaatgtcttaaggccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16334695 |
catctccttttttaagctcgttgtcatctataaatgtcttaaggccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatc |
16334596 |
T |
|
| Q |
101 |
accacgaaagctaataaaaacatcaaaagaatttgaagccacctccaaagtagaagaagaagaagcacctatatttatttgcatagccattacaactgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16334595 |
accacgaaagctaataaaaacatcaaaagaatttgaagccacctccaaagtagaagaagaagaagcacctatatttatttgcatagccattacaactgct |
16334496 |
T |
|
| Q |
201 |
gcaaaaccaaggaatgaatatattataaatataagttaagaagagagtgcg-nnnnnnnnncacgtcgtgaagcaggaggaaaatggcnnnnnnngacaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
16334495 |
gcaaaaccaaggaatgaatatattataaatataagttaagaagagagtgcgaaaaaaaaaacacgtcgtgaagcaggaggaaaatggcaaaaaaagacaa |
16334396 |
T |
|
| Q |
300 |
aggttaattacctgtttat |
318 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
16334395 |
aggttaattacctgtttat |
16334377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 16124956 - 16125275
Alignment:
| Q |
1 |
catctccttttttaagctcgttgtcatctataaatgtcttaaggccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatc |
100 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16124956 |
catctccttttttaagctcgctgtcgtctataaatgtcttaacaccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatc |
16125055 |
T |
|
| Q |
101 |
accacgaaagctaataaaaacatcaaaagaatttgaagccacctccaaagtagaagaagaagaagcacctatatttatttgcatagccattacaactgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16125056 |
accacgaaagctaataaaaacatcaaaagaatttgaagccacctccaaagtagaagaagaagaagcacctatatttatttgcatagccattacaactgct |
16125155 |
T |
|
| Q |
201 |
gcaaaaccaaggaatgaatatattataaatataagttaagaagagagtgcg--nnnnnnnnncacgtcgtgaagcaggaggaaaatggcnnnnnnngaca |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
16125156 |
gcaaaaccaaggaatgaatatattataaatataagttaagaagagagtgcgaaaaaaaaaaacacgtcgtgaagcaggaggaaaatggcaaaaaaagaca |
16125255 |
T |
|
| Q |
299 |
aaggttaattacctgtttat |
318 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
16125256 |
aaggttaattacctgtttat |
16125275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 16127109 - 16127359
Alignment:
| Q |
1 |
catctccttttttaagctcgttgtcatctataaatgtcttaaggccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatc |
100 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16127109 |
catctccttttttaagctcgctgtcgtctataaatgtcttaacaccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatc |
16127208 |
T |
|
| Q |
101 |
accacgaaagctaataaaaacatcaaaagaatttgaagccacctccaaagtagaagaagaagaagcacctatatttatttgcatagccattacaactgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16127209 |
accacgaaagctaataaaaacatcaaaagaatttgaagccacctccaaagtagaagaagaagaagcacctatatttatttgcatagccattacaactgct |
16127308 |
T |
|
| Q |
201 |
gcaaaaccaaggaatgaatatattataaatataagttaagaagagagtgcg |
251 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16127309 |
gcaaaaccaaggaatgaatatattatagatataagttaagaagagagtgcg |
16127359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 203
Target Start/End: Original strand, 36017444 - 36017644
Alignment:
| Q |
3 |
tctccttttttaagctcgttgtcatctataaatgtcttaaggccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatcac |
102 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||| ||| ||| ||| |||||| ||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
36017444 |
tctcctttttcaagctcgctgtcatctacaaatgtcctaacgccactccttttcagagcttcattaagatggcttgtgaatttgctacgagtatcctcac |
36017543 |
T |
|
| Q |
103 |
cacgaaagctaataaaaacatcaaaagaatttgaagccacctccaaagtagaagaagaagaagcacctatatttatttgcatagccattacaactgctgc |
202 |
Q |
| |
|
||| |||| ||||||||||||||| || |||||||||||||||| ||| |||||||||||||||| | ||| |||||||||||||||||||| ||| |
|
|
| T |
36017544 |
cacaaaagtcaataaaaacatcaaattttttcgaagccacctccaaagaagatgaagaagaagcacctagaattagttgcatagccattacaactgatgc |
36017643 |
T |
|
| Q |
203 |
a |
203 |
Q |
| |
|
| |
|
|
| T |
36017644 |
a |
36017644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 36034354 - 36034489
Alignment:
| Q |
3 |
tctccttttttaagctcgttgtcatctataaatgtcttaaggccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatcac |
102 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
36034354 |
tctcctttttcaagctcgctgtcgtctataaatgtccaaaggccgctcttttgcagagctttattaagatggcttgtgaatttgctacgagtatcctcac |
36034453 |
T |
|
| Q |
103 |
cacgaaagctaataaaaacatcaaaagaatttgaag |
138 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||| |||| |
|
|
| T |
36034454 |
catgaaagttaataaaaacatcaaaaaaattcgaag |
36034489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 36025542 - 36025663
Alignment:
| Q |
3 |
tctccttttttaagctcgttgtcatctataaatgtcttaaggccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatcac |
102 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||| | |||| ||| |||||||| ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
36025542 |
tctcctttttcaagctcattgtcatctataaatgttataa---ctttcttgctcagagcttcataaagatggcttgtgaagtttctacgagtatcctcac |
36025638 |
T |
|
| Q |
103 |
cacgaaagctaataaaaacatcaaa |
127 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
36025639 |
cacgaaagctgataaaaacatcaaa |
36025663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 36004781 - 36004902
Alignment:
| Q |
3 |
tctccttttttaagctcgttgtcatctataaatgtcttaaggccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatcac |
102 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||| |||| ||| |||||||| ||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
36004781 |
tctcctttttcaagctcattgtcatctataaatgttataattt---tcttgctcagagcttcataaagatggcttgtgaactttctaccagtatcctcac |
36004877 |
T |
|
| Q |
103 |
cacgaaagctaataaaaacatcaaa |
127 |
Q |
| |
|
||| ||||||||||||||| ||||| |
|
|
| T |
36004878 |
cacaaaagctaataaaaacgtcaaa |
36004902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 23456161 - 23456227
Alignment:
| Q |
55 |
tcaaagcttcattaagatggcttgtgaattttctacgagtatcatcaccacgaaagctaataaaaac |
121 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||| |||||||| ||||| |||||||||| |||||| |
|
|
| T |
23456161 |
tcaaagcatcataaagatggcttgtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaac |
23456227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 23388524 - 23388582
Alignment:
| Q |
63 |
tcattaagatggcttgtgaattttctacgagtatcatcaccacgaaagctaataaaaac |
121 |
Q |
| |
|
|||| ||||||||| ||||| ||||| |||||||||||||| |||||||||| |||||| |
|
|
| T |
23388524 |
tcataaagatggctcgtgaagtttctgcgagtatcatcacctcgaaagctaagaaaaac |
23388582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 36009892 - 36009950
Alignment:
| Q |
69 |
agatggcttgtgaattttctacgagtatcatcaccacgaaagctaataaaaacatcaaa |
127 |
Q |
| |
|
||||||| |||||| ||||||||||| | ||||||||||| ||||||||||| ||||| |
|
|
| T |
36009892 |
agatggcctgtgaagtttctacgagtgccctcaccacgaaaactaataaaaacgtcaaa |
36009950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 12894653 - 12894532
Alignment:
| Q |
1 |
catctccttttttaagctcgttgtcatctataaatgtcttaaggccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatc |
100 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| || ||| | |||| ||||||| |||| |||||| |||||||| ||||||||||||| || |
|
|
| T |
12894653 |
catctcctttttgaagctcattgtcatctataaaggttataa---ctttcttgctcaaagcatcataaagatgacttgtgaagcttctacgagtatcctc |
12894557 |
T |
|
| Q |
101 |
accacgaaagctaataaaaacatca |
125 |
Q |
| |
|
||| |||||||| |||||||||||| |
|
|
| T |
12894556 |
accgcgaaagcttataaaaacatca |
12894532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 167542 - 167480
Alignment:
| Q |
63 |
tcattaagatggcttgtgaattttctacgagtatcatcaccacgaaagctaataaaaacatca |
125 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||| ||||| |||||||||| ||| |||||| |
|
|
| T |
167542 |
tcataaagatggcttgtgaagtttctgcgagtatcctcacctcgaaagctaagaaacacatca |
167480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 9628 - 9571
Alignment:
| Q |
63 |
tcattaagatggcttgtgaattttctacgagtatcatcaccacgaaagctaataaaaa |
120 |
Q |
| |
|
|||| |||||||||||| || ||||| |||||||| ||||| |||||||||| ||||| |
|
|
| T |
9628 |
tcataaagatggcttgttaagtttctgcgagtatcctcacctcgaaagctaagaaaaa |
9571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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