View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_6 (Length: 652)
Name: NF3710_low_6
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 590
Target Start/End: Original strand, 37974088 - 37974648
Alignment:
| Q |
18 |
ccaacaaagttcaccgtatccaacaaatgcaaatactcaacctgtaatttattcctaaatatatatata--atgcttacnnnnnnnnnnnnatatatgca |
115 |
Q |
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| T |
37974088 |
ccaacaaagttcaccgtatccaacaaatgcaaatactcaacctgtaatttattcctaaatatatatatataatgcttacttttattttt--atatatgca |
37974185 |
T |
|
| Q |
116 |
gcagcatataacgtgctagtatataataataaatatggtattcattcataacataacataacacaacaaactacaaaagcattgttctgtgggctcgacc |
215 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37974186 |
gca---tataacgtgctagtatataataataa-tatggtattcattcata-----acataacacaacaaactacaaaagcattgttctgtgggctcgacc |
37974276 |
T |
|
| Q |
216 |
ctcaatgcggggaccgattctccaaactaagacacgtgtaacaattttgtatatctcattttcgtgagaaccatacaggtgtacttaaggaccatcgctc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37974277 |
ctcaatgcggggaccgattctccaaactaagacacgtgtaacaattttgtatatctcattttcgtgagaaccatacaggtgtacttaaggaccatcgctc |
37974376 |
T |
|
| Q |
316 |
accactcataaccaagcatagtttctaagttctgacactatgacaataacaaagaccaagacaagaggttcctatacatctttatgacttcaattactgc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37974377 |
accactcataaccaagcatagtttctaagttctgacactatgacaataacaaagaccaagacaagaggttcctatacatctttatgagttcaattactgc |
37974476 |
T |
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| Q |
416 |
gtgtgatccagattcactttagtactatattcatcatgttgttccaattatggtttttaaatattgattcccacttcgctcatgggtgtatgtttggatt |
515 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |
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| T |
37974477 |
gtgtgatccagattcactttaatactatattcatcatgttgttccaattatggtttttaaatattgattcccactttgcttatgggtgaatgtttggatt |
37974576 |
T |
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| Q |
516 |
cacgttttaagaagtgtctgtttgattaagcgtctcaagttggcatatgtagcttctgcctaaaggtgatttttt |
590 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
37974577 |
gacgtttt---aagtgtctgtttgattaagcgtcccaagttggcatatgtagcttctgcctaaaggtcatttttt |
37974648 |
T |
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