View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_low_61 (Length: 329)

Name: NF3710_low_61
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_low_61
NF3710_low_61
[»] chr4 (1 HSPs)
chr4 (17-313)||(37449163-37449458)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 37449458 - 37449163
Alignment:
Q  17 atgaaacgattgtggaacagattgttgaaaatcgcctgagagaatttggaatacacaaactatctaatggggtgatactgatctgaaactcgctttggtg 116  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37449458 atgaaacgattgtggaacagattgttgaaaatcgcc-gagagaatttggaatacacaaactatctaatggggtgatactgatctgaaactcgctttggcg 37449360  T
Q  117 gaagctttcgcagaatgaacaacaccaacgctgacggaacaatctccaccaactgcaccacaaaataatcaacaaagcaaaaccattccatttaaataac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37449359 gaagctttcgcagaatgaacaacaccaacgctgacggaacaatctccaccaactgcaccacaaaataatcaacaaagcaaaaccattccatttaaataac 37449260  T
Q  217 aatacatttcaaatcatttttcaaccaaatgcaatatgagaaatgttgaaagactttgaaacttaccaaataatacactaagttaagcatgggatgg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37449259 aatacatttcaaatcatttttcaaccaaatgcaatatgagaaatgttgaaagactttgaaacttaccaaataatacactaagttaagcatgggatgg 37449163  T

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