View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_low_7 (Length: 580)

Name: NF3710_low_7
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_low_7
NF3710_low_7
[»] chr5 (1 HSPs)
chr5 (20-571)||(19971962-19972523)
[»] chr3 (4 HSPs)
chr3 (111-172)||(39745517-39745578)
chr3 (91-161)||(51203162-51203231)
chr3 (90-163)||(30670793-30670865)
chr3 (91-163)||(15462111-15462182)
[»] chr2 (2 HSPs)
chr2 (91-172)||(38308027-38308107)
chr2 (91-163)||(1326191-1326263)
[»] chr4 (1 HSPs)
chr4 (138-217)||(45195754-45195832)
[»] chr1 (1 HSPs)
chr1 (91-172)||(563871-563952)
[»] scaffold0071 (1 HSPs)
scaffold0071 (91-163)||(10-81)


Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Complemental strand, 19972523 - 19971962
Alignment:
Q  20 gaggtaatgtttattttagctttgctttcacgattatttattgcattcttttatgcaattaaaattgggcattctttttccaccctattgagtttctcgt 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||| ||||||| |||||||||||||||||||||    
T  19972523 gaggtaatgtttattttagttttgctttcacgattatttattgtattcttttatgcatttaaa-ttgggccttcttttcccaccctattgagtttctcgt 19972425  T
Q  120 gcgttttatgaagttcgaattatagaattcgaacgacataaacatcttataaatacccttcaagacacgttataacatcttggattttagaattcaaaca 219  Q
    ||||| |||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||| |||||||| |||||||||||||||||||| ||||||    
T  19972424 gcgttctatgaagttcgaattatagaatccgaacgccataaacatcctataaatccccttcaaaacacgttaaaacatcttggattttagaatccaaaca 19972325  T
Q  220 aactgcacgcaaaaactcataaggtggnnnnnnntaactgcatttaaaattgtttgtnnnnnnnnntgcatttaaaattatagtgatagaaattccaaat 319  Q
    || |||||||||||||||||||| |||       |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  19972324 aattgcacgcaaaaactcataagatggaaaaaaataactgcatttaaaattgtttgtaaaaaaaaatgcatttaaaattatagtgatagaaattccaaat 19972225  T
Q  320 gtctttacaagtctcagaaaattctttccttggttgagtggaacattaaaatcttatttatgatataccggtcacaaaccttgctgcaaaagaccctata 419  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  19972224 gtctttacaagtctcagaaaagtctttccttggttgagtggaacattaaaatcttatttatgattgaccggtcacaaaccttgctgcaaaagaccctata 19972125  T
Q  420 aatatcttttcact-----------aaggctaaggctctgttctggaggaggggcatacatgcaaaattcgagaaatctttcatatatttggagagaggg 508  Q
    ||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  19972124 aatatcttttcactaaggcaaagagaaggctaaggctctgttctggaggaggggcatacatgcaaaattcgagaaatctttcatatatgttgagagaggg 19972025  T
Q  509 cttttgcagagaaaaataaacaaatagttataattaatttatttttaatattaagagtattat 571  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19972024 cttttgcagagaaaaataaacaaataattataattaatttatttttaatattaagagtattat 19971962  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 39745517 - 39745578
Alignment:
Q  111 gtttctcgtgcgttttatgaagttcgaattatagaattcgaacgacataaacatcttataaa 172  Q
    |||||||||||||| |||| |||||| ||||||| || |||||| |||||||||| ||||||    
T  39745517 gtttctcgtgcgttctatgcagttcggattataggatccgaacggcataaacatcatataaa 39745578  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 51203162 - 51203231
Alignment:
Q  91 ttctttttccaccctattgagtttctcgtgcgttttatgaagttcgaattatagaattcgaacgacataaa 161  Q
    ||||||||||| |||||  |||||||||||||   |||| ||||||||||||||||| ||||| |||||||    
T  51203162 ttctttttccatcctatc-agtttctcgtgcgccatatgcagttcgaattatagaatccgaacaacataaa 51203231  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 30670793 - 30670865
Alignment:
Q  90 attctttttccaccctattgagtttctcgtgcgttttatgaagttcgaattatagaattcgaacgacataaaca 163  Q
    |||||||||||||| |||||| |||||| |||||  |||| ||||  |||||||||||||||||  ||||||||    
T  30670793 attctttttccaccatattga-tttctcatgcgtcctatgtagtttaaattatagaattcgaacagcataaaca 30670865  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 15462182 - 15462111
Alignment:
Q  91 ttctttttccaccctattgagtttctcgtgcgttttatgaagttcgaattatagaattcgaacgacataaaca 163  Q
    ||||||||||| ||||| |||||||||| ||   ||||| ||||||||||||||||| | |||| ||||||||    
T  15462182 ttctttttccaacctat-gagtttctcgcgctccttatgcagttcgaattatagaatccaaacggcataaaca 15462111  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 38308027 - 38308107
Alignment:
Q  91 ttctttttccaccctattgagtttctcgtgcgttttatgaagttcgaattatagaattcgaacgacataaacatcttataaa 172  Q
    ||||||| |||||||||| | ||||||||| || ||||| |||| |||||||||||| |||||| |||||||| | ||||||    
T  38308027 ttcttttcccaccctattaa-tttctcgtgtgtcttatgcagtttgaattatagaatccgaacggcataaacaccctataaa 38308107  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 1326191 - 1326263
Alignment:
Q  91 ttctttttccaccctattgagtttctcgtgcgttttatgaagttcgaattatagaattcgaacgacataaaca 163  Q
    ||||||||||  |||||||||||||||| ||||||| || | || | |||||| |||| ||||| ||||||||    
T  1326191 ttctttttccgtcctattgagtttctcgcgcgttttttgtaatttggattataaaattagaacggcataaaca 1326263  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 45195754 - 45195832
Alignment:
Q  138 attatagaattcgaacgacataaacatcttataaatacccttcaagacacgttataacatcttggattttagaattcaaa 217  Q
    |||||| |||||||||||||||||||||||||||| |  || ||| | |||||| ||||| | | |||||||||||||||    
T  45195754 attatataattcgaacgacataaacatcttataaa-aatctccaaaatacgttaaaacatttcgaattttagaattcaaa 45195832  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 563952 - 563871
Alignment:
Q  91 ttctttttccaccctattgagtttctcgtgcgttttatgaagttcgaattatagaattcgaacgacataaacatcttataaa 172  Q
    ||||||| ||||||| |||||||||||| |||   |||  ||||||||||||||||||  || |||||||||| | ||||||    
T  563952 ttcttttcccaccctgttgagtttctcgcgcgacctatacagttcgaattatagaatttaaatgacataaacaccctataaa 563871  T

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Target: scaffold0071 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 10 - 81
Alignment:
Q  91 ttctttttccaccctattgagtttctcgtgcgttttatgaagttcgaattatagaattcgaacgacataaaca 163  Q
    ||||||||||| ||||| |||||||||| ||   ||||| ||||||||||||||||| | |||| ||||||||    
T  10 ttctttttccaacctat-gagtttctcgcgctccttatgcagttcgaattatagaatccaaacggcataaaca 81  T

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