View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3710_low_70 (Length: 303)

Name: NF3710_low_70
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3710_low_70
NF3710_low_70
[»] chr6 (12 HSPs)
chr6 (99-303)||(2997509-2997725)
chr6 (93-303)||(2659106-2659331)
chr6 (93-209)||(2964356-2964472)
chr6 (10-209)||(2973869-2974068)
chr6 (118-303)||(2934349-2934546)
chr6 (118-303)||(3003906-3004109)
chr6 (118-303)||(2951692-2951889)
chr6 (118-303)||(2926910-2927107)
chr6 (11-301)||(2982624-2982923)
chr6 (224-299)||(2964242-2964317)
chr6 (242-303)||(2973763-2973824)
chr6 (11-95)||(2964485-2964569)
[»] scaffold0024 (2 HSPs)
scaffold0024 (25-209)||(35274-35449)
scaffold0024 (229-278)||(35478-35527)
[»] chr7 (1 HSPs)
chr7 (143-300)||(3338934-3339091)
[»] chr3 (4 HSPs)
chr3 (118-186)||(49618292-49618361)
chr3 (94-191)||(49613307-49613404)
chr3 (250-303)||(49618145-49618198)
chr3 (27-95)||(49613418-49613486)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 99 - 303
Target Start/End: Original strand, 2997509 - 2997725
Alignment:
Q  99 actagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagctggttttcaagtaacaataaatctaatgttataccaaca 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |  |||||||||| ||    
T  2997509 actagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatttgttgttataccatca 2997608  T
Q  199 tctaaccaagg------------cacaccataagcgtatctacaaaagagttgagttataaaaccggaatcaattaagattaacttaacaagatcatcat 286  Q
    || |||||| |            | |||||||   ||||||  | || |||| | |||||||||||||||| |||||||||||||||||||| |||||||    
T  2997609 tcgaaccaaagttcaaagacaaacccaccatagtggtatctcaagaaaagttcaattataaaaccggaatcgattaagattaacttaacaagttcatcat 2997708  T
Q  287 gagaaaatggtagggtt 303  Q
    |||||||||||||||||    
T  2997709 gagaaaatggtagggtt 2997725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 93 - 303
Target Start/End: Original strand, 2659106 - 2659331
Alignment:
Q  93 aggaacactagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagctggttttcaagtaacaataaatctaatgttata 192  Q
    ||||||||||||||||||||||||  |||||||  ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  2659106 aggaacactagcatttgtagaactcgatgaaagtttgtaaatttcttcaataacgaaaaagggaagctgattttcaagtaacaataaatctaatgctata 2659205  T
Q  193 ccaacatctaaccaagg--------------ca-caccataagcgtatctacaaaagagttgagttataaaaccggaatcaattaagattaacttaacaa 277  Q
    ||| |||||||||||||              || || |||||  |||| | ||||| |||||| ||||||||| |||||| |||||||||||||||||||    
T  2659206 ccatcatctaaccaaggtttaaatagaaacccatcatcataatagtatgtccaaaaaagttgaattataaaacaggaatcgattaagattaacttaacaa 2659305  T
Q  278 gatcatcatgagaaaatggtagggtt 303  Q
    | |||| || ||||||||||||||||    
T  2659306 gttcattatcagaaaatggtagggtt 2659331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 2964472 - 2964356
Alignment:
Q  93 aggaacactagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagctggttttcaagtaacaataaatctaatgttata 192  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| || |||||    
T  2964472 aggaacactagcatttgtagaactcaatgaaagactgtaaattttttcaataacgaaatagggaagctgattttcaagtaacattaaatctgatcttata 2964373  T
Q  193 ccaacatctaaccaagg 209  Q
    ||||||| |||||||||    
T  2964372 ccaacatataaccaagg 2964356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 2974068 - 2973869
Alignment:
Q  10 attatactaatatctttattatcaaaacccaattttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaagagaa-ggaacactagcattt 108  Q
    |||||||||||||| || ||||||||||||||||||| ||||||||||| |||||| ||| ||| |||||||| ||||| |||| ||| || |||  ||     
T  2974068 attatactaatatcattgttatcaaaacccaattttggtttattgaaacattgaaagtaagcaatagtgagtttaagaaaagaatggatca-tagtgtta 2973970  T
Q  109 gtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagctggttttcaagtaacaataaatctaatgttataccaacatctaaccaag 208  Q
    | |  | | ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||  || ||||||||    
T  2973969 ggaacagtcaatgaaatactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatgatatatcattatataaccaag 2973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 303
Target Start/End: Complemental strand, 2934546 - 2934349
Alignment:
Q  118 aatgaaagactgtaaattttttcaataacgaaaaagggaagctggttttcaagtaacaataaatctaatgttataccaacatctaaccaag--------- 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||   ||||||||||  ||||||| |||             
T  2934546 aatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacattaaatcgtctgttataccagtatctaacaaaggtttaaaga 2934447  T
Q  209 ---gcacaccataagcgtatctacaaaagagttgagttataaaaccggaatcaattaagattaacttaacaagatcatcatgagaaaatggtagggtt 303  Q
       || |  |||||  || ||| ||||| |||||| |||||||| ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||    
T  2934446 gacgcccttcataatagtctctccaaaaaagttgaattataaaagcggaatctattaaaattaacttaacaagttcatcatgagaaaatggtagggtt 2934349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 118 - 303
Target Start/End: Original strand, 3003906 - 3004109
Alignment:
Q  118 aatgaaagactgtaaattttttcaataacgaaaaagggaagctggttttcaagtaacaataaatctaatgttataccaacatctaaccaag--------- 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||   | ||||||||  |||||||||||             
T  3003906 aatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtttcttataccattatctaaccaaggtttaaaga 3004005  T
Q  209 ----gcac-----accataagcgtatctacaaaagagttgagttataaaaccggaatcaattaagattaacttaacaagatcatcatgagaaaatggtag 299  Q
        ||||     | |||||  |||||| ||||| |||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  3004006 gaatgcaccgacgatcataatagtatctccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtag 3004105  T
Q  300 ggtt 303  Q
    ||||    
T  3004106 ggtt 3004109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 118 - 303
Target Start/End: Complemental strand, 2951889 - 2951692
Alignment:
Q  118 aatgaaagactgtaaattttttcaataacgaaaaagggaagctggttttcaagtaacaataaatctaatgttataccaacatctaaccaagg-------- 209  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||   | ||||||||  | ||||||||||            
T  2951889 aatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtattataccagtacctaaccaaggtttaaaga 2951790  T
Q  210 ----cacaccataagcgtatctacaaaagagttgagttataaaaccggaatcaattaagattaacttaacaagatcatcatgagaaaatggtagggtt 303  Q
        | |  |||||  | || | ||||| |||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  2951789 gctccccttcataacaggatgtccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtt 2951692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 303
Target Start/End: Complemental strand, 2927107 - 2926910
Alignment:
Q  118 aatgaaagactgtaaattttttcaataacgaaaaagggaagctggttttcaagtaacaataaatctaatgttataccaacatctaaccaagg-------- 209  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||   | ||||||||  ||||||||||||            
T  2927107 aatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtcttataccattatctaaccaaggtttaaaga 2927008  T
Q  210 cacac----cataagcgtatctacaaaagagttgagttataaaaccggaatcaattaagattaacttaacaagatcatcatgagaaaatggtagggtt 303  Q
     ||||    | |||  | || | ||||| |||||| |||||||| ||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  2927007 gacacccttcgtaataggatgtccaaaaaagttgaattataaaagcggaattgattaagattaacttaacaagttcatcatgagaaaatggtagggtt 2926910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 2982923 - 2982624
Alignment:
Q  11 ttatactaatatctttattatcaaaacccaattttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaagagaaggaacactagcatttgt 110  Q
    |||||||||||||   ||||||||||  ||||||||||||||| ||   || ||| ||||  | |||||||||||||| ||||||||||||    | | |    
T  2982923 ttatactaatatcaccattatcaaaagacaattttgatttattcaattttttaaagtaatggatagtgagttcaagaaaagaaggaacacttttgtatat 2982824  T
Q  111 agaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagctggttttcaagtaacaataaatctaatgttataccaacatctaaccaagg- 209  Q
     ||||   ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||  ||  ||||  |   | |||||||||     
T  2982823 ggaac---atgaacgactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacagtacatcatataatataagactttttaaccaaggt 2982727  T
Q  210 -----------cacaccataagcgtatctacaaaagagttgagttataaaaccggaatcaattaagattaacttaacaagatcatcatgagaaaatggta 298  Q
               | ||||||||   | ||| ||||| |||||| |||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||    
T  2982726 tgaaagagagccccaccataatattttctccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcattatgagaaaatggta 2982627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 2964317 - 2964242
Alignment:
Q  224 atctacaaaagagttgagttataaaaccggaatcaattaagattaacttaacaagatcatcatgagaaaatggtag 299  Q
    |||| ||||| |||| | |||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  2964317 atctgcaaaaaagttcaattataaaaccagaatcgattaagattaacttgacaagttcatcatgagaaaatggtag 2964242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 2973824 - 2973763
Alignment:
Q  242 ttataaaaccggaatcaattaagattaacttaacaagatcatcatgagaaaatggtagggtt 303  Q
    |||||||||||||||| ||||| |||||||||||||| |||  ||||||||||| |||||||    
T  2973824 ttataaaaccggaatccattaaaattaacttaacaagttcaatatgagaaaatgatagggtt 2973763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 2964569 - 2964485
Alignment:
Q  11 ttatactaatatctttattatcaaaacccaattttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaagagaagg 95  Q
    |||||||||||||    ||||||||| ||||||||||||||||| ||   | ||||||||||  |||||||| ||||| ||||||    
T  2964569 ttatactaatatcacccttatcaaaatccaattttgatttattgtaataatcaaaataatcagtagtgagtttaagaaaagaagg 2964485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 35274 - 35449
Alignment:
Q  25 ttattatcaaaacccaattttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaagagaaggaacactagcatttgtagaactgaatgaaa 124  Q
    |||||||||||| |||||||||||| |||||||  ||||||||||| || |||||||||||||| ||||          |||||||||||||  | ||||    
T  35274 ttattatcaaaaaccaattttgattgattgaaatattgaaaataattaatagtgagttcaagaaaagaac---------catttgtagaactccacgaaa 35364  T
Q  125 gactgtaaattttttcaataacgaaaaagggaagctggttttcaagtaacaataaatctaatgttataccaacatctaaccaagg 209  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||||||||    
T  35365 gaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatcttataccagcatctaaccaagg 35449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 35478 - 35527
Alignment:
Q  229 caaaagagttgagttataaaaccggaatcaattaagattaacttaacaag 278  Q
    ||||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  35478 caaaaaagttgaattataaaaccggaatcgattaagattaacttaacaag 35527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 143 - 300
Target Start/End: Complemental strand, 3339091 - 3338934
Alignment:
Q  143 taacgaaaaagggaagctggttttcaagtaacaataaatctaatgttataccaacatctaaccaaggcacaccataag-cgtatctacaaaagagttgag 241  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |  | ||||||||   |     || | || | |||||| ||||||     
T  3339091 taacgaaaaagggaagctgattttcaagtaacaataaatctgatgatataccacctaccaaccaaggtttaaagagagacatacc-acaaaaaagttgaa 3338993  T
Q  242 ttataaaaccggaatcaattaagattaacttaacaagatcatcatgagaaaatggtagg 300  Q
    |||||||||||||||| |||||||||||||||||||| | ||||| |||||||| ||||    
T  3338992 ttataaaaccggaatcgattaagattaacttaacaagtttatcatcagaaaatgttagg 3338934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 49618361 - 49618292
Alignment:
Q  118 aatgaaagactgtaaattttttcaataacgaaaaagggaagctggttttcaagt-aacaataaatctaat 186  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| |||| |||| |||||||||||||||    
T  49618361 aatgaaagaatgtaaatattttcaataacgaaatagggaagctgattttgaagtaaacaataaatctaat 49618292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 49613404 - 49613307
Alignment:
Q  94 ggaacactagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagctggttttcaagtaacaataaatctaatgttat 191  Q
    ||||||||||| || |||||| | ||||||||| ||||||||| || |||||| ||||| || |  || |||||||||||||| ||||||||| ||||    
T  49613404 ggaacactagcgttagtagaagtaaatgaaagattgtaaatttcttgaataacaaaaaatggcaattgattttcaagtaacaacaaatctaatcttat 49613307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 49618198 - 49618145
Alignment:
Q  250 ccggaatcaattaagattaacttaacaagatcatcatgagaaaatggtagggtt 303  Q
    ||||||||||||||||||||||||||||  |||||||||| |||| ||||||||    
T  49618198 ccggaatcaattaagattaacttaacaaattcatcatgagtaaattgtagggtt 49618145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 49613486 - 49613418
Alignment:
Q  27 attatcaaaacccaattttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaagagaagg 95  Q
    ||||||||||||||| ||||||| |||| ||  |  ||||||||||||| | |||||||||| ||||||    
T  49613486 attatcaaaacccaagtttgattgattgtaatatgcaaaataatcaaaactaagttcaagaaaagaagg 49613418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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