View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3710_low_72 (Length: 300)
Name: NF3710_low_72
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_72 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 971208 - 971443
Alignment:
| Q |
5 |
attatgaaaagataagggggcagaggatctccttgtctaatttcccttttaggtttaaacatagtagatggggattcatttataagaatggaaaaagata |
104 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
971208 |
attatgaaaagataaggggagagaggatctccttgtctaattccccttttaggtttaaacatagtagatggggatccatttataagaatggaaaaagaca |
971307 |
T |
|
| Q |
105 |
cacttctgacacacaacattatagttttaacaattttaataggaaagtccatagtgagaagagtgctttctaggaaatcccattccactctatcatatgc |
204 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
971308 |
cacttctgacacacagcattatagttttaacaattttaatagggaagcccatagtgagaagagtgctttctaggaaatcccattccactctatgatatgc |
971407 |
T |
|
| Q |
205 |
tttttccatatcaagcttaattccaaccacgccaga |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
971408 |
tttttccatatcaagcttaattccaaccacaccaga |
971443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 43136247 - 43136452
Alignment:
| Q |
26 |
agaggatctccttgtctaatttcccttttaggtttaaacatagtagatggggattcatttataagaatggaaaaagatacacttctgacacacaacatta |
125 |
Q |
| |
|
||||| ||||||||||||||| | || ||||||||||| ||||||| | ||| |||| || ||||| |||||||| |||||||||||||| | || | |
|
|
| T |
43136247 |
agagggtctccttgtctaattcctctcttaggtttaaaagtagtagaatgagatccattaattagaatagaaaaagagacacttctgacacaaagcacga |
43136346 |
T |
|
| Q |
126 |
tagttttaacaattttaataggaaagtccatagtgagaagagtgctttctaggaaatcccattccactctatcatatgctttttccatatcaagcttaat |
225 |
Q |
| |
|
|||| || |||| ||||||||||| |||| |||| ||||| ||||| |||||||| |||||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
43136347 |
tagtattgacaagattaataggaaaacccatggtgaagagagttgattctaaaaaatcccactccactctgtcatatgccttttccagatcaagcttaat |
43136446 |
T |
|
| Q |
226 |
tccaac |
231 |
Q |
| |
|
|||||| |
|
|
| T |
43136447 |
tccaac |
43136452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University