View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_75 (Length: 295)
Name: NF3710_low_75
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 2564670 - 2564939
Alignment:
| Q |
18 |
agatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatcaaacttcaccagaccaaagtggg |
117 |
Q |
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| T |
2564670 |
agatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatcaaagttcaccagaccaaagtggg |
2564769 |
T |
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| Q |
118 |
ttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctattgttggaggccctgattttaatgaccaattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2564770 |
ttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctatagttggaggccctgattttaatgaccaattt |
2564869 |
T |
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| Q |
218 |
aatgatgcaagatctgattactctcattctgaacctactacttatataaatgctgctttcacaggttctg |
287 |
Q |
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| T |
2564870 |
aatgatgcaagatctgattactctcattctgaacctactacttatatgaatgctgctttcataggttctg |
2564939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 2574564 - 2574822
Alignment:
| Q |
18 |
agatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatcaaacttcaccagaccaaagtggg |
117 |
Q |
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|||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2574564 |
agatgtcatatatggtgggatatgggagtaaatatccaaaacaattacatcacagaggttcttccatcccttcaatcaaagttcaccagaccaaagtggg |
2574663 |
T |
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| Q |
118 |
ttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctattgttggaggccctgattttaatgaccaattt |
217 |
Q |
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| T |
2574664 |
ttgcaatgatggccaatcgaactatttctcatcatctaatccaaatcctaatattcatgtgggtgctattgttggaggaccaaattctaatgaccaatac |
2574763 |
T |
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| Q |
218 |
aatgatgcaagatctgattactctcattctgaacctactacttatataaatgctgcttt |
276 |
Q |
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||||||||||||||||||||||||||| | |||||||| || ||||| ||||||||||| |
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| T |
2574764 |
aatgatgcaagatctgattactctcatgcagaacctaccacctatatgaatgctgcttt |
2574822 |
T |
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