View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_78 (Length: 292)
Name: NF3710_low_78
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 34316335 - 34316065
Alignment:
| Q |
7 |
gacatcatcacataacattatcaagtgttgttagaaatatcatggaattttagtcaataaaatcaaaatactatgtatatatattgtaacaccccctcgt |
106 |
Q |
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| T |
34316335 |
gacatcactacataacattatcaagtgttgttagaaatatcatggaattttagtcaataaaatcaaaatactatgtatatatattgtaacaccccctcgt |
34316236 |
T |
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| Q |
107 |
ccatcttttttcggaccaagaatgttacttgtaggtactgactggtacggaaaaaagagctgcgagaggaattttacacataatttgaagg-nnnnnnng |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
34316235 |
ccatcttttttcggaccaagaatgttacttgtaggtactgactggtccggaaaaaagagctgcgagaggaatgttacacataatttgaaggaaaaaaaag |
34316136 |
T |
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| Q |
206 |
ttatgaataaaagaacgtactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaac |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316135 |
ttatgaataaaagaacgtactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaac |
34316065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 38953323 - 38953375
Alignment:
| Q |
224 |
actaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaac |
276 |
Q |
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| T |
38953323 |
actaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaac |
38953375 |
T |
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