View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_79 (Length: 291)
Name: NF3710_low_79
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 39085447 - 39085244
Alignment:
| Q |
18 |
tttccaacattatatttctatctttattttgttcttatgagagaaaataagggatgattatgaatgttgagctaacaaaaatactcaacatatgctt-tt |
116 |
Q |
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| T |
39085447 |
tttccaacataatatttctatctttattttgttcttatgaga--aaataagggatgattatgaatgttgagctaacaaaaatactcaacatatgcttttt |
39085350 |
T |
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| Q |
117 |
ttaagggg---nnnnnnntactctac----atatgtgtcgaacaaaaattgtactactattattgttttgnnnnnnnacaatattttaattgaagcatta |
209 |
Q |
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| T |
39085349 |
ttaaggggaaaaaaaaaatactctacatatatatgtgtcgaacaaaaattgcactactattattgttttgtttttttacaatattttaattgaagcatta |
39085250 |
T |
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| Q |
210 |
taaaat |
215 |
Q |
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|||||| |
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| T |
39085249 |
taaaat |
39085244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 39083639 - 39083563
Alignment:
| Q |
205 |
cattataaaatattattttcgatacatgagttgcacgggtgtagtactctggtaaagataagataactggtcctttg |
281 |
Q |
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| T |
39083639 |
cattataaaatattatttttgatacatgagttgcacgggtgtagtactctggtaaagataagataattggtcctttg |
39083563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 39089379 - 39089279
Alignment:
| Q |
151 |
acaaaaattgtactactattattgttttgnnnnnnnacaatattttaattgaagcattataaaatattattttcgatacatgagttgcacgggtgtagta |
250 |
Q |
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| T |
39089379 |
acaaaaattgtactactattattgtttt-tctttttacaatttttaaattgaagcattacaaaatattatttctgatacatgagaagcacgggtgtagta |
39089281 |
T |
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| Q |
251 |
ct |
252 |
Q |
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|| |
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| T |
39089280 |
ct |
39089279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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