View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_81 (Length: 290)
Name: NF3710_low_81
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_81 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 9087086 - 9086823
Alignment:
| Q |
18 |
aataaactatttttactctttcttatgttt-agttaatcaaaagaatattactccctatattttgcagccagagaatcttcttttagacacaaatggtgt |
116 |
Q |
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| T |
9087086 |
aataaactatttttactctttcttaagttttagttaatcaaaagaatattactccctatattttgcagccagagaatcttcttttagatacaaatggtgt |
9086987 |
T |
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| Q |
117 |
tcttaaagtttcagattttggattaagtacatactcacaacaggtatgataatattaatcccaaataattatttgattccattattccaaataatttggt |
216 |
Q |
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| T |
9086986 |
tcttaaagtttcagattttggattaagtacatactcacagcaggtatgataatattaatcccaaataattatttgattccattattccaaataatttggt |
9086887 |
T |
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| Q |
217 |
tttcgattatactttaaccgagtagatgagtgttacatatgcataaccttaggactcacctttg |
280 |
Q |
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| T |
9086886 |
tttcgattatactttaaccgagtagatgagtgttacatttgcataaccttaggactcacctttg |
9086823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 9078309 - 9078056
Alignment:
| Q |
18 |
aataaactatttttactctttcttatgttt-agttaatcaaaagaatattactccctatattttgcagccagagaatcttcttttagacacaaatggtgt |
116 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9078309 |
aataaactatttttactctttcttaagttttagttaatcaaaagaatattactccctatattttgcagccagagaatcttcttttagatacaaatggtgt |
9078210 |
T |
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| Q |
117 |
tcttaaagtttcagattttggattaagtacatactcacaacaggtatgataatattaatcccaaataattatttgattccattattccaaataatttggt |
216 |
Q |
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| T |
9078209 |
tcttaaagtttcagattttggattaagtacatactcacagcaggtatgattatattaatcccaaataattatttgattcaattattccaaataatttggt |
9078110 |
T |
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| Q |
217 |
tttcgattatactttaaccgagtagatgagtgttacatatgcataaccttagga |
270 |
Q |
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| T |
9078109 |
tttggattatactttaacctagtagatgagtgttacatttgaataaccttagga |
9078056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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