View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_90 (Length: 261)
Name: NF3710_low_90
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 3100304 - 3100072
Alignment:
| Q |
18 |
ataaccaattcaccattgcaacacatataaacactctcctcctcatcaccaccgtccaccaaagtcataggacacgtggcacaatccaaatactcttcct |
117 |
Q |
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| T |
3100304 |
ataaccaattcaccattgcaacacatataaacactctcctcctcatcaccaccgtccaccaaagtcataggacacgtggcacaatccaaatactcttcct |
3100205 |
T |
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| Q |
118 |
ccacttgaccccacttccacgtcacaaaatcaaacgcctccgcactcctctcaaacctcccttgattctccgtcgtgtaaccaccaacaactataaacct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3100204 |
ccacttgaccccacttccacgtcacaaaatcaaacgcctccgcactcctctcaaacctcccttgattctccgtcgtgtaaccaccaacaactataaacct |
3100105 |
T |
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| Q |
218 |
cccgccacggaacaccgccttacactcgtctct |
250 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3100104 |
cccgccacggaacaccgccttacactcgtctct |
3100072 |
T |
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