View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3710_low_97 (Length: 250)
Name: NF3710_low_97
Description: NF3710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3710_low_97 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 34316660 - 34316421
Alignment:
| Q |
11 |
cacagaccaaactactctagctttctttatgaaagtttgatctaagaatacttggtcatcatgtttactatcaaaatctttccttttcttcattaagttc |
110 |
Q |
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| T |
34316660 |
cacagaccaaactactctagctttctttatgaaagtttgatctaagaatacttggtcatcatgtttactatcaaaatctttccttttcttcattaagttc |
34316561 |
T |
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| Q |
111 |
atttcttttcctacagcaaacaggttaccatcatcagtgtgatctgatccattcctcattaagtgaattccctcaagactttcaaattctcttgcctcac |
210 |
Q |
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| T |
34316560 |
atttcttttcctacagcaaacaggttaccatcatcagtgtgatctgatccattcctcattaagtgaattccctcaagactttcaaattctcttgcctcac |
34316461 |
T |
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| Q |
211 |
gtattctttttcttaagacatgttgccatatgtttcgcac |
250 |
Q |
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| T |
34316460 |
gtattctttttcttaagacatgttgccatatgtttcgcac |
34316421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 34322010 - 34321968
Alignment:
| Q |
11 |
cacagaccaaactactctagctttctttatgaaagtttgatct |
53 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
34322010 |
cacataccaaactactctagctttctttatggaagtttgatct |
34321968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 38953054 - 38953113
Alignment:
| Q |
190 |
tttcaaattctcttgcctcacgtattctttttcttaagacatgttgccatatgtttcgca |
249 |
Q |
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| T |
38953054 |
tttcaaattctctaacctcgtgtatcctttttctgaagacatgttgccatatatttcgca |
38953113 |
T |
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