View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3711_high_1 (Length: 786)
Name: NF3711_high_1
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 371 - 644
Target Start/End: Original strand, 28825782 - 28826042
Alignment:
| Q |
371 |
gtgacatgtatcattaaaataattaaaattgaaattgagattctaaagtaacaacgcatgccccaagtccaagatccccacatcttttgctgatcattga |
470 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28825782 |
gtgacatgtttcattaaaataattaaaaatgaaattgagattctaaagtaacaacgcatgccccaagtccaagatccccacctcttttgctgatcattga |
28825881 |
T |
|
| Q |
471 |
ctttatattaaaacaattgaccagtcacgtgccactcacatgttattcaacccacattttcatcaacctctttcccatgccaggggtgtgtgaaaataca |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28825882 |
ctttatattaaaacaattgaccagtcacgtgccactcacatgctattcaa-------------caacctctttcccatgccaggggtgtgtgaaaataca |
28825968 |
T |
|
| Q |
571 |
caaaacactgaaaattgtacccgttgtttaggnnnnnnngccatcattatttcattgttcagagttgatggaat |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28825969 |
caaaacactgaaaattgtacccgttgtttaggaaaaaaagccatcattatttcattgttcagagttgatggaat |
28826042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 28825501 - 28825697
Alignment:
| Q |
18 |
atttccacgtacacaattcaatggaaaatattatccatccaaactataatccataataatttttggaatttgttccaatatctatgtcatgtagttgaag |
117 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28825501 |
atttccatgtacacaattcaatggaaaacattatctatccaaactataatccataacaatatttggaatttgttccaatatctatgtcatgtagttgaag |
28825600 |
T |
|
| Q |
118 |
tttcaactatgtttcaatattattatccagtaaaagtattatggctcttgcttcgtataaaattaaaataaaattttatggctctccctcattcttg |
214 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28825601 |
tttcaactatgtttcaatatttttatccaataaaagtattaaggctcttgctttgtataaaattaaaataaaattttatggctctccctctttcttg |
28825697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 717 - 774
Target Start/End: Original strand, 28826115 - 28826172
Alignment:
| Q |
717 |
atgataattgcagtgaagcagtgtttcccatttttaaccgcatgccgtaaaatctctc |
774 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28826115 |
atgataattgcagtgaagcagtgtttcccatttttaaccgcatgccgtaaaatctctc |
28826172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 4614338 - 4614375
Alignment:
| Q |
216 |
taatgtaatatttactacatttgatttcttaatcaatg |
253 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
4614338 |
taatgtaatacttactacatttgctttcttaatcaatg |
4614375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 28957774 - 28957832
Alignment:
| Q |
215 |
ttaatgtaatatttactacatttgatttcttaatcaatgttccataaacatcaattaac |
273 |
Q |
| |
|
||||||||||||||| || |||| ||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
28957774 |
ttaatgtaatatttattatatttaattccttaatcagtgttccataaacatcgattaac |
28957832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University