View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3711_high_10 (Length: 360)

Name: NF3711_high_10
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3711_high_10
NF3711_high_10
[»] chr8 (4 HSPs)
chr8 (144-359)||(8871919-8872143)
chr8 (288-357)||(9605016-9605085)
chr8 (287-360)||(10260412-10260485)
chr8 (287-360)||(17834440-17834513)
[»] chr4 (1 HSPs)
chr4 (290-360)||(48026160-48026230)
[»] scaffold0913 (1 HSPs)
scaffold0913 (287-359)||(3526-3598)
[»] scaffold0898 (1 HSPs)
scaffold0898 (287-359)||(2003-2075)
[»] chr5 (2 HSPs)
chr5 (290-360)||(20174547-20174617)
chr5 (310-360)||(32295920-32295970)
[»] chr7 (7 HSPs)
chr7 (287-360)||(13596901-13596974)
chr7 (287-360)||(23586177-23586250)
chr7 (289-360)||(26754863-26754934)
chr7 (294-360)||(22911163-22911229)
chr7 (290-360)||(23040118-23040188)
chr7 (287-357)||(48859425-48859495)
chr7 (287-360)||(15026342-15026415)
[»] chr6 (2 HSPs)
chr6 (287-360)||(15610092-15610165)
chr6 (288-357)||(5827557-5827626)
[»] chr3 (5 HSPs)
chr3 (287-360)||(52585688-52585761)
chr3 (289-360)||(39453121-39453192)
chr3 (311-360)||(53581293-53581342)
chr3 (289-360)||(8726867-8726938)
chr3 (289-360)||(9078754-9078825)
[»] chr2 (5 HSPs)
chr2 (287-360)||(33170960-33171032)
chr2 (287-360)||(15745619-15745692)
chr2 (290-360)||(5849119-5849189)
chr2 (288-359)||(36098784-36098855)
chr2 (287-356)||(19051558-19051627)
[»] chr1 (5 HSPs)
chr1 (287-357)||(30939668-30939738)
chr1 (287-357)||(42132020-42132090)
chr1 (310-357)||(43896445-43896492)
chr1 (310-356)||(39220935-39220981)
chr1 (287-360)||(44022171-44022244)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 144 - 359
Target Start/End: Complemental strand, 8872143 - 8871919
Alignment:
Q  144 gaacacactatttgaaagaggaactatgattattgttgcaagttttatttggtcacaacatgt-----------attcggccatacacataaatnnnnnn 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |           ||||||||||||||||||||          
T  8872143 gaacacactatttgaaagaggaactatgattattgttgcaagttttatttggtcacaacatctgataaaaatatattcggccatacacataaataaaaaa 8872044  T
Q  233 ntttaactaaaataatttagtcggatcatttaaatttttgaattatttatttacctgcacatcaggatattatagattttgggatgattattcataatta 332  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||||||||||    
T  8872043 atttaactaaaataatttagtcggatcatttaaattattgaattatttatttacatgcacattaggata--atagattttgggatgattattcataatta 8871946  T
Q  333 taaaattatttttgaacaatattatgt 359  Q
    |||||||||||||||||||||||||||    
T  8871945 taaaattatttttgaacaatattatgt 8871919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 9605085 - 9605016
Alignment:
Q  288 tgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattat 357  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||||| ||||||||| ||| |||||||||||    
T  9605085 tgcacatcaagatgttatagagtttgtgatgattattcataattgtaaaattatctttaaacaatattat 9605016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 10260412 - 10260485
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||||||| ||| ||| | | |||||||||||||||||||||| ||||| ||| ||||||||||| ||||||    
T  10260412 ctgcacatcatgatgttacataatttgggatgattattcataattgtaaaactatctttgaacaatactatgtc 10260485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 17834513 - 17834440
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||| || |  ||| |||||| |||| ||||||    
T  17834513 ctgcacatcaggatgttacagaatttgggatgattattcataattgtatagctatctttgaataatactatgtc 17834440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 48026230 - 48026160
Alignment:
Q  290 cacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    ||||||||||| ||| | |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  48026230 cacatcaggatgttacaaattttgggatgattattcataattgtaaaactatctttgaacaatattatgtc 48026160  T

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Target: scaffold0913 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 3526 - 3598
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgt 359  Q
    |||||||||||||| ||| ||| |||||||| ||||||||||||| ||||||||| ||||||| |||||||||    
T  3526 ctgcacatcaggatgttacagagtttgggataattattcataattgtaaaattatctttgaacgatattatgt 3598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 2075 - 2003
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgt 359  Q
    |||||||||||||| ||| ||| |||||||| ||||||||||||| ||||||||| ||||||| |||||||||    
T  2075 ctgcacatcaggatgttacagagtttgggataattattcataattgtaaaattatctttgaacgatattatgt 2003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 20174547 - 20174617
Alignment:
Q  290 cacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    ||||||| ||| ||||||| |||| ||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  20174547 cacatcaagatgttatagagtttgagatgattattcataattgtaaaactatctttgaacaatattatgtc 20174617  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 32295970 - 32295920
Alignment:
Q  310 tttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||||||||||| ||||||| ||||| ||| |||||||||||| |||||    
T  32295970 tttgggatgattatccataattgtaaaactatctttgaacaatatcatgtc 32295920  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 13596901 - 13596974
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||||||||||| ||| ||| ||||||||||| |||||||||| ||||| ||| ||||||||||| ||||||    
T  13596901 ctgcacatcaggattttacagaatttgggatgataattcataattgtaaaactatctttgaacaatactatgtc 13596974  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 23586177 - 23586250
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||||||| ||| ||| | | |||||||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  23586177 ctgcacatcaagatgttacaaagtttgggatgattattcataattgtaaaactatctttgaacaatattatgtc 23586250  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 26754863 - 26754934
Alignment:
Q  289 gcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||||||||| ||| | | |||||||||||||| ||||||| ||||| ||| ||||||||||||||||||    
T  26754863 gcacatcaggatgttacataatttgggatgattatccataattgtaaaactatctttgaacaatattatgtc 26754934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 22911163 - 22911229
Alignment:
Q  294 tcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    ||||||| ||| ||| |||||||||||||| ||||||| ||||| ||| ||||||||||||||||||    
T  22911163 tcaggatgttacagaatttgggatgattatccataattgtaaaactatctttgaacaatattatgtc 22911229  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 23040188 - 23040118
Alignment:
Q  290 cacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    ||||||||||| ||| ||| |||| ||||||||| ||||||| ||||| ||| ||||||||||||||||||    
T  23040188 cacatcaggatgttacagaatttgcgatgattatccataattgtaaaactatctttgaacaatattatgtc 23040118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 48859425 - 48859495
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattat 357  Q
    |||||||||||||| ||  ||| |||||||||||||||||||||| ||||| ||| | |||||||||||||    
T  48859425 ctgcacatcaggatgttgcagaatttgggatgattattcataattgtaaaactatctatgaacaatattat 48859495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 15026342 - 15026415
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||| ||||||| ||| | | |||||||||||||| |||| || | ||| ||| ||||||||||||||||||    
T  15026342 ctgcacgtcaggatgttacataatttgggatgattatccatatttgttaaactatctttgaacaatattatgtc 15026415  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 15610092 - 15610165
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||||||||||| ||| ||| |||||||||||||| ||||||| ||||| ||| ||||||||||| ||||||    
T  15610092 ctgcacatcaggatgttacagaatttgggatgattatccataattgtaaaactatctttgaacaatactatgtc 15610165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 5827557 - 5827626
Alignment:
Q  288 tgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattat 357  Q
    ||||| ||||||| ||| | | |||||||||||||| ||||||| ||||| ||| |||||||||||||||    
T  5827557 tgcacgtcaggatgttacaaaatttgggatgattatccataattgtaaaactatctttgaacaatattat 5827626  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 52585761 - 52585688
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||||||||||| ||| ||| |||| |||||||||| |||||| ||||| ||| ||||||||||||||||||    
T  52585761 ctgcacatcaggatgttacagaatttgagatgattatttataattgtaaaactatctttgaacaatattatgtc 52585688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 39453192 - 39453121
Alignment:
Q  289 gcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||||| ||||||| | | ||||||||||| || ||||||| ||||| ||| ||||||||||||||||||    
T  39453192 gcacatcaagatattacaaaatttgggatgatgatccataattgtaaaactatctttgaacaatattatgtc 39453121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 53581293 - 53581342
Alignment:
Q  311 ttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    ||||||||||||| ||||||| ||||| ||| ||||||||||||||||||    
T  53581293 ttgggatgattatccataattgtaaaactatctttgaacaatattatgtc 53581342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 8726867 - 8726938
Alignment:
Q  289 gcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||| ||||| ||| ||| |||| ||||||||||||||| | ||||||||| |||||||| ||| |||||    
T  8726867 gcacattaggatgttacagagtttgtgatgattattcataagtgtaaaattatctttgaacagtatcatgtc 8726938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 9078754 - 9078825
Alignment:
Q  289 gcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||| ||||| ||| ||| |||| ||||||||||||||| | ||||||||| |||||||| ||| |||||    
T  9078754 gcacattaggatgttacagagtttgtgatgattattcataagtgtaaaattatctttgaacagtatcatgtc 9078825  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 33171032 - 33170960
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||||||||||| ||| ||| ||||| |||||||||||||||| ||||| ||| ||||||||||||||||||    
T  33171032 ctgcacatcaggatgttacagagtttgg-atgattattcataattgtaaaactatctttgaacaatattatgtc 33170960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 15745692 - 15745619
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||| | ||||| ||| ||| |||||||||||||| ||||||| ||||| ||| ||||||||||||||||||    
T  15745692 ctgcacgttaggatgttacagaatttgggatgattatccataattgtaaaactatatttgaacaatattatgtc 15745619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 5849119 - 5849189
Alignment:
Q  290 cacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    ||||||||||| ||| | | | ||||||||||||| |||||||||||| ||| |||||||||| |||||||    
T  5849119 cacatcaggatgttacataatgtgggatgattatttataattataaaactatctttgaacaatgttatgtc 5849189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 36098784 - 36098855
Alignment:
Q  288 tgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgt 359  Q
    ||||||||||||| ||||||| | | | || ||||||||| |||  |||| |||||||||||||||||||||    
T  36098784 tgcacatcaggatgttatagagtattgcattattattcatgattggaaaactatttttgaacaatattatgt 36098855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 19051558 - 19051627
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatatta 356  Q
    ||||||||||| || ||| | | || ||||||||||||||||| | ||||| ||| ||||||||||||||    
T  19051558 ctgcacatcagaatgttacatagttcgggatgattattcataagtgtaaaactatatttgaacaatatta 19051627  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 30939738 - 30939668
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattat 357  Q
    |||||||||| ||| ||| | | |||||||||||||||||||||| ||||| ||| ||||| |||||||||    
T  30939738 ctgcacatcaagatgttacaaaatttgggatgattattcataattttaaaactatctttgatcaatattat 30939668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 42132020 - 42132090
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattat 357  Q
    |||||||||||||| ||| | | |||||||||||||| ||||||  ||||| ||| |||||||||||||||    
T  42132020 ctgcacatcaggatgttacataatttgggatgattatccataatcgtaaaactatctttgaacaatattat 42132090  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 43896445 - 43896492
Alignment:
Q  310 tttgggatgattattcataattataaaattatttttgaacaatattat 357  Q
    ||||| |||||||||||||||| ||||| ||| |||||||||||||||    
T  43896445 tttggaatgattattcataattgtaaaactatctttgaacaatattat 43896492  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 39220935 - 39220981
Alignment:
Q  310 tttgggatgattattcataattataaaattatttttgaacaatatta 356  Q
    |||||||||| ||||||||||| ||||||||||||  ||||||||||    
T  39220935 tttgggatgactattcataattgtaaaattattttcaaacaatatta 39220981  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 44022171 - 44022244
Alignment:
Q  287 ctgcacatcaggatattatagattttgggatgattattcataattataaaattatttttgaacaatattatgtc 360  Q
    |||||||| ||||| ||| | | |||||||||||||| |||||||  |||| ||| ||||||||||| ||||||    
T  44022171 ctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatactatgtc 44022244  T

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