View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_high_11 (Length: 359)
Name: NF3711_high_11
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 345
Target Start/End: Original strand, 4584435 - 4584766
Alignment:
| Q |
14 |
ttctcaagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatgttttaccctgtcatg |
113 |
Q |
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| T |
4584435 |
ttctcaagagttttgaaagctgtttcagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatattttaccctgtcatg |
4584534 |
T |
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| Q |
114 |
atttgcagtcagcatttcctactgttgtaatctcggccatatatgaagatcagatggttataattttaagttttatgtaaatccgatttcaaaattcaaa |
213 |
Q |
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| T |
4584535 |
atttgcagtcagcatttcctactgttgtaatctcggccatatatgaagatcggatggttataattttaagttttatgtaaatccgatttcaaaattcaaa |
4584634 |
T |
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| Q |
214 |
acacaaactgtccgtatttcatctaacattccataatgttagcaatctggattcaatcttagtgactgcattcaatctggattgataatattagtattcc |
313 |
Q |
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| T |
4584635 |
acacaaactgtccgtatttcatctaacattccataatgtcagcaatctggattcaatcttagtgactgcattcaatctggattgataatattagtattcc |
4584734 |
T |
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| Q |
314 |
ataatgtacagatgtagcagacgaagttgatg |
345 |
Q |
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| T |
4584735 |
ataatgcacagatgtagcagacgaagttgatg |
4584766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 4592179 - 4592269
Alignment:
| Q |
14 |
ttctcaagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatgttttac |
104 |
Q |
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| T |
4592179 |
ttctcaagagttttgaaagctgtttcagtacaatgagacatatcctgtcaaagaatatgtagaatgagattaatctagaccaatgttttac |
4592269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 4573208 - 4573293
Alignment:
| Q |
14 |
ttctcaagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatgt |
99 |
Q |
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| T |
4573208 |
ttctcaacagtttggaaagctgtttcagtacaatgtgatatatcctgtcaaagaatatgtaggatgagattaatctagaccaatgt |
4573293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 4592482 - 4592550
Alignment:
| Q |
276 |
tgactgcattcaatctggattgataatattagtattccataatgtacagatgtagcagacgaagttgatg |
345 |
Q |
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| T |
4592482 |
tgactgcagtcaatctggatcgatagtat-agtattccataatgtacagatgtagcagaccaagttgatg |
4592550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 4600618 - 4600682
Alignment:
| Q |
19 |
aagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagat |
83 |
Q |
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| T |
4600618 |
aagagttttgaaagttgtttcagtacaatgtgacaggttctgtcaaagaatatgtagaatgagat |
4600682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 4592329 - 4592380
Alignment:
| Q |
104 |
ccctgtcatgatttgcagtcagcatttcctactgttgtaatctcggccatat |
155 |
Q |
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| T |
4592329 |
ccctgtcatgatttgctgtcagcatttcctactgtggtagtctcggccatat |
4592380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 4592410 - 4592467
Alignment:
| Q |
191 |
taaatccgatttcaaaattcaaaacacaaactgtccgtatttcatctaacattccata |
248 |
Q |
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| T |
4592410 |
taaatcagatttcaaaatttaaaacacaaaccgttcgtacttcctctaacaatccata |
4592467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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