View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3711_high_16 (Length: 304)
Name: NF3711_high_16
Description: NF3711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3711_high_16 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 3 - 304
Target Start/End: Complemental strand, 14060655 - 14060354
Alignment:
| Q |
3 |
aggattcaatgacaactatctcgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcggtgaccaatatcccgaagggcta |
102 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14060655 |
aggattcaatgacaatgatcttgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaagggcta |
14060556 |
T |
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| Q |
103 |
aatcttaagtttgatcgattgatgtacatatggagagatgtttcgttgttggagaaccaacttccataccaaatgcttgagattatatgcaatgaaagag |
202 |
Q |
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|||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14060555 |
aatcttaagtttgaccaattgatgtatatatggagagatgtttcgttgttagagaaccaacttccataccaaatgcttgagattatatgcaatgaaagag |
14060456 |
T |
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| Q |
203 |
gcattgatttgaactttttagttaacaattttcaagatatgggtgcatgcaaacgttatggaatgacaatgattccattgaaaaatcctaaaccatttca |
302 |
Q |
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| T |
14060455 |
gcattgatttgaactttttagttaacaattatcagggtatgggtgcatgcaaacgttatggaatgacaatgattccattgaaaaatcctaaaccatttca |
14060356 |
T |
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| Q |
303 |
ta |
304 |
Q |
| |
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|| |
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| T |
14060355 |
ta |
14060354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 304
Target Start/End: Complemental strand, 14049284 - 14048983
Alignment:
| Q |
3 |
aggattcaatgacaactatctcgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcggtgaccaatatcccgaagggcta |
102 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||||||| ||||||||| |
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| T |
14049284 |
aggattcaatgacaacgatcttgcttggatattgttcgtggatggatgttccttgctgcattttatggaaaatgtcgatgaccaatatcctgaagggcta |
14049185 |
T |
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| Q |
103 |
aatcttaagtttgatcgattgatgtacatatggagagatgtttcgttgttggagaaccaacttccataccaaatgcttgagattatatgcaatgaaagag |
202 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14049184 |
aatcttaagtttgatcaattgatgtacatatggagagatgttaagttgttggagaaccaacttccataccaaatgcttgagattatatgcaatgcaagag |
14049085 |
T |
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| Q |
203 |
gcattgatttgaactttttagttaacaattttcaagatatgggtgcatgcaaacgttatggaatgacaatgattccattgaaaaatcctaaaccatttca |
302 |
Q |
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||||||||||||| |||||||||| ||||| ||| | |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14049084 |
gcattgatttgaattttttagttagcaattatcagggtatgggtgcatgtaaacgttatggaatgacattgattccattgaaaaatcctaaaccatttca |
14048985 |
T |
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| Q |
303 |
ta |
304 |
Q |
| |
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|| |
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| T |
14048984 |
ta |
14048983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 15874223 - 15873985
Alignment:
| Q |
20 |
atctcgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcggtgaccaatatcccgaa-gggctaaatcttaagtttgatc |
118 |
Q |
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|||| |||||||||||||| |||||||||||||| |||||||| || ||||||||||| | |||||||| |||||| | ||||| ||||||||||| | |
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| T |
15874223 |
atcttgcttggatattgtttgtggatggatgttctttgctacactttatgggaaatgttgatgaccaat-gcccgaatgccctaaaccttaagtttgacc |
15874125 |
T |
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| Q |
119 |
gattgatgtacatatggagagatgtttcgttgttggagaaccaacttccatacca-aatgcttgagattatatgcaatgaaagaggcattgatttgaact |
217 |
Q |
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| ||||| |||||||||||||| || ||||||||||| |||||||| | | ||||||||||||| ||||| | |||| || ||||||||| | | |
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| T |
15874124 |
aactgatgcacatatggagagatactttattgttggagaatcaacttcccaagaataatgcttgagattctatgcgaagaaatgggtattgatttggaat |
15874025 |
T |
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| Q |
218 |
ttttagttaacaattttcaagatatgggtgcatgcaaacg |
257 |
Q |
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||||| ||||||||| | |||||||||| || |||||| |
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| T |
15874024 |
ttttaattaacaattcttttgatatgggtgaatccaaacg |
15873985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 15899846 - 15900129
Alignment:
| Q |
20 |
atctcgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcggtgaccaatatcccgaagggctaaatcttaagtttgatcg |
119 |
Q |
| |
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|||| |||||||||||||| |||||||||||||| |||||||| || |||| |||||| | |||||||| || || | ||||| ||||||||||| | |
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| T |
15899846 |
atcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttgacca |
15899945 |
T |
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| Q |
120 |
attgatgtacatatggagagatgtttcgttgttggagaaccaacttccataccaaatgcttgagattatatgcaatgaaagaggcattgatttgaacttt |
219 |
Q |
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| T |
15899946 |
actgatgcacatatggagagatacttttttgttggagaatcaacttccaaaaataatgcttgagattctatgcgaagaaacgagtgttgatttggatttt |
15900045 |
T |
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| Q |
220 |
ttagttaacaattttcaagatatgggtgcatgcaaacgttatggaatgacaatgattccattgaaaaatcctaaaccatttcat |
303 |
Q |
| |
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||| ||||||||| | | ||||||||||||||||| ||||||| ||||| | | |||| |||||| ||| || |||||| |
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| T |
15900046 |
ttaattaacaattcttttgcaatgggtgcatgcaaacgacttggaatggcaatgctccaattggaaaatcataagccctttcat |
15900129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 15920874 - 15921048
Alignment:
| Q |
20 |
atctcgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcggtgaccaatatcccgaagggctaaatcttaagtttgatcg |
119 |
Q |
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|||| |||||||||||||| |||||||||||||| |||||||| || |||| |||||| | |||||||| || || | ||||| ||||||||||| | |
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| T |
15920874 |
atcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttgacca |
15920973 |
T |
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| Q |
120 |
attgatgtacatatggagagatgtttcgttgttggagaaccaacttccataccaaatgcttgagattatatgcaa |
194 |
Q |
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| ||||| |||||||||||||| | ||||| |||||||| |||||| || |||||||||||||| ||||||| |
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| T |
15920974 |
actgatgcacatatggagagatactaatttgttagagaaccagcttccaaacaaaatgcttgagattctatgcaa |
15921048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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